View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5873-33 (Length: 107)
Name: Solexa-NF5873-33
Description: NF5873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5873-33 |
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| [»] scaffold1577 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 74; Significance: 2e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 2e-34
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 10797846 - 10797761
Alignment:
| Q |
1 |
gtcaacaagtttacaccaagacagtgcctataaatacaaaggcttccatatgctcataagccacacaccaacatacctatcttgtt |
86 |
Q |
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| T |
10797846 |
gtcaacaagttcacaccaagacagtgcctataaacacaaaggcttccatatgctcataagccacacaccaacatacatatcttgtt |
10797761 |
T |
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Target: scaffold1577 (Bit Score: 68; Significance: 7e-31; HSPs: 1)
Name: scaffold1577
Description:
Target: scaffold1577; HSP #1
Raw Score: 68; E-Value: 7e-31
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 96 - 25
Alignment:
| Q |
15 |
accaagacagtgcctataaatacaaaggcttccatatgctcataagccacacaccaacatacctatcttgtt |
86 |
Q |
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| T |
96 |
accaagacagtgcctataaatacaaaggcttccatatgctcataagccacacaccaacatacatatcttgtt |
25 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 1e-16
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 50079428 - 50079350
Alignment:
| Q |
15 |
accaagacagtgcc-tataaatacaaaggcttccatat------gctcataagccacacaccaacatacctatcttgtt |
86 |
Q |
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| T |
50079428 |
accaagacagtgccctataaatacaaaggcttccatatccatatgctcataagccacacaccaacatacatatcttgtt |
50079350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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