View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5873-34 (Length: 103)
Name: Solexa-NF5873-34
Description: NF5873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5873-34 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 79; Significance: 2e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 2e-37
Query Start/End: Original strand, 8 - 103
Target Start/End: Complemental strand, 16665828 - 16665731
Alignment:
| Q |
8 |
gtaacagtcttccatttcaatcctctcagatc--aatcaaaccctaacaattttcttcttctccggactacgtttttctccgattcattcatctccgg |
103 |
Q |
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| T |
16665828 |
gtaacagtcttccatttcaatcctctcagatctcaatcaaaccctaacaattttcttcttctccggactccgtttttctcagattcattcatctccgg |
16665731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 1e-16
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 40720119 - 40720217
Alignment:
| Q |
3 |
caacagtaacagtcttccatttcaatcctctcagatc--aatcaaaccctaacaattttcttcttctccggactacgtttttctccgattcattcatct |
99 |
Q |
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| T |
40720119 |
caactgtaaccgtcttccagtccaatcctctcagatctgaatcaaaccctaactcttctcctcttctccggattctgtttttctccgattcattcatct |
40720217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 1e-16; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 1e-16
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 3464389 - 3464487
Alignment:
| Q |
3 |
caacagtaacagtcttccatttcaatcctctcagatc--aatcaaaccctaacaattttcttcttctccggactacgtttttctccgattcattcatct |
99 |
Q |
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| T |
3464389 |
caactgtaaccgtcttccagtccaatcctctcagatctgaatcaaaccctaactcttctcctcttctccggattctgtttttctccgattcattcatct |
3464487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 21857036 - 21857126
Alignment:
| Q |
14 |
gtcttccatttcaatcctctcagatc--aatcaaaccctaacaattttcttcttctccggactacgtttttctccgattcattcatctccgg |
103 |
Q |
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| T |
21857036 |
gtcttccattccaatcctctcagatctgaatcaaactctaactcttctcctcttctccg-attctgtttttctccgattcattcatctccgg |
21857126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 21912899 - 21912989
Alignment:
| Q |
14 |
gtcttccatttcaatcctctcagatc--aatcaaaccctaacaattttcttcttctccggactacgtttttctccgattcattcatctccgg |
103 |
Q |
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|||||||||| ||||||||||||||| |||||||| ||||| || || ||||||||| | | ||||||||||||||||||||||||||| |
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| T |
21912899 |
gtcttccattccaatcctctcagatctgaatcaaactctaactcttctcctcttctccg-attctgtttttctccgattcattcatctccgg |
21912989 |
T |
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