View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5873-37 (Length: 95)
Name: Solexa-NF5873-37
Description: NF5873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5873-37 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 88; Significance: 7e-43; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 7e-43
Query Start/End: Original strand, 8 - 95
Target Start/End: Original strand, 152112 - 152199
Alignment:
| Q |
8 |
gattacattctaacacaagcttggctcagcaaaagcatcacaagggacttgattttgttggaaaatcagataccattttttgtattga |
95 |
Q |
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| T |
152112 |
gattacattctaacacaagcttggctcagcaaaagcatcacaagggacttgattttgttggaaaatcagataccattttttgtattga |
152199 |
T |
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Target: chr8; HSP #2
Raw Score: 84; E-Value: 2e-40
Query Start/End: Original strand, 8 - 95
Target Start/End: Original strand, 160547 - 160634
Alignment:
| Q |
8 |
gattacattctaacacaagcttggctcagcaaaagcatcacaagggacttgattttgttggaaaatcagataccattttttgtattga |
95 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
160547 |
gattacattctaacacaagcttggctcagcaaaagcatcacaagggacttgattttgttggaaaatcagatacctttttttgtattga |
160634 |
T |
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