View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5873-40 (Length: 93)
Name: Solexa-NF5873-40
Description: NF5873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5873-40 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 74; Significance: 2e-34; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 2e-34
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 6403259 - 6403344
Alignment:
| Q |
8 |
tttttcttcctcaaacaaaaagcttgcaactttgaaccatttctactctccgcttctgtttcaaatggaagaagatggaagcagat |
93 |
Q |
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| T |
6403259 |
ttttccttcctcaaacaaaaagcttgcaactttgaaccatttccactctccgcttctgtttcaaatggaagaagatggaagtagat |
6403344 |
T |
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Target: chr1; HSP #2
Raw Score: 66; E-Value: 9e-30
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 6419602 - 6419687
Alignment:
| Q |
8 |
tttttcttcctcaaacaaaaagcttgcaactttgaaccatttctactctccgcttctgtttcaaatggaagaagatggaagcagat |
93 |
Q |
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| T |
6419602 |
tttttcttcctcaaacaaaaagcttgcaactttgaaccatttccactctctgcttctctttaaaatggaagtagatggaagcagat |
6419687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 6390033 - 6390080
Alignment:
| Q |
31 |
ttgcaactttgaaccatttctactctccgcttctgtttcaaatggaaga |
79 |
Q |
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| T |
6390033 |
ttgcacctttgaaccatttc-actctctgcttctgtttcaaatggaaga |
6390080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 19922838 - 19922885
Alignment:
| Q |
31 |
ttgcaactttgaaccatttctactctccgcttctgtttcaaatggaaga |
79 |
Q |
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| T |
19922838 |
ttgcaactttgaaccatttc-actctctgcttctgtttcaaatggaaga |
19922885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 74
Target Start/End: Complemental strand, 19922006 - 19921964
Alignment:
| Q |
31 |
ttgcaactttgaaccatttctactctccgcttctgtttcaaatg |
74 |
Q |
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| T |
19922006 |
ttgcaactttgaaccatttc-actctctgcttatgtttcaaatg |
19921964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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