View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5873-43 (Length: 49)
Name: Solexa-NF5873-43
Description: NF5873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5873-43 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 48; Significance: 2e-19; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-19
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 24369882 - 24369835
Alignment:
| Q |
2 |
gatcaacattgtcattttcatcatcactgtcacatgaagtatcatagt |
49 |
Q |
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| T |
24369882 |
gatcaacattgtcattttcatcatcactgtcacatgaagtatcatagt |
24369835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.000000000000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 24344592 - 24344548
Alignment:
| Q |
5 |
caacattgtcattttcatcatcactgtcacatgaagtatcatagt |
49 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
24344592 |
caacattgtcattttcatcatcagtgtcacatgaagtatcatagt |
24344548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 24358526 - 24358488
Alignment:
| Q |
2 |
gatcaacattgtcattttcatcatcactgtcacatgaag |
40 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
24358526 |
gatcaacattgtcattttcatcatcactgtcacatgaag |
24358488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 24364765 - 24364810
Alignment:
| Q |
2 |
gatcaacattgtcattttcatcatcactgtcacatgaagtatcata |
47 |
Q |
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|||||||||||||||||||||||| | |||||| ||||| |||||| |
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| T |
24364765 |
gatcaacattgtcattttcatcattagtgtcacttgaagaatcata |
24364810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 24351779 - 24351735
Alignment:
| Q |
5 |
caacattgtcattttcatcatcactgtcacatgaagtatcatagt |
49 |
Q |
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||||||| |||||||||||||| |||||||||||| |||||||| |
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| T |
24351779 |
caacatttccattttcatcatcagtgtcacatgaagaatcatagt |
24351735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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