View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5873-6 (Length: 208)
Name: Solexa-NF5873-6
Description: NF5873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5873-6 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 164; Significance: 8e-88; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 52798562 - 52798769
Alignment:
| Q |
1 |
agactaagaaaatagactcaagttattgaaaaccaatttgattttatgttagagagatcgaccatggaagctatctacttgctatggtgtgtgatgaaac |
100 |
Q |
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| T |
52798562 |
agactaagaaaatagactcaagttattgaaaaccaatttgattttatgttagagagatcgaccatggaagctatctacttgctatagcgtgtgatgaaac |
52798661 |
T |
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| Q |
101 |
aatatcagatggacnnnnnnnnctacacttagtttttattaatatggagaaaacaattgatagagcatcaagagagatttgtggaaaatcatatagaaga |
200 |
Q |
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| T |
52798662 |
gatatcagatggacaaaaaatactacacttagtttttattaatatggagaaaacaattgatagatcaccaagagagatttgtggaaaatcatatagaaga |
52798761 |
T |
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| Q |
201 |
aagaggtt |
208 |
Q |
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| T |
52798762 |
aagaggtt |
52798769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 31 - 80
Target Start/End: Complemental strand, 50630495 - 50630446
Alignment:
| Q |
31 |
aaccaatttgattttatgttagagagatcgaccatggaagctatctactt |
80 |
Q |
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| T |
50630495 |
aaccaatttgattttatgcttgcgaggtcgaccatggaagcaatctactt |
50630446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 13148398 - 13148445
Alignment:
| Q |
1 |
agactaagaaaatagactcaagttattgaaaaccaatttgattttatg |
48 |
Q |
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| T |
13148398 |
agactaagaaaagagactcgagttatcgataaccaatttgattttatg |
13148445 |
T |
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