View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5873-7 (Length: 203)
Name: Solexa-NF5873-7
Description: NF5873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5873-7 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 7 - 203
Target Start/End: Original strand, 2328639 - 2328835
Alignment:
| Q |
7 |
agaatgcaaaaaggaaattgcaattgcttggaaagttgtaaattcggaatgtcttaggccaaccaaagttccaatgccgtttctaacccgcgctctcaac |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2328639 |
agaatgcaaaaaggaaattgcaattgcttggaaagttgtaaattcggaatgtcttaggccaaccaaagttccaatgccgtttctaacccgcgctctcaac |
2328738 |
T |
|
| Q |
107 |
cttgcgcgttttatggatgtagtttacaaagatgaagataactacacacgttctgaaggactaatgaagtcatatatcaaagctgttcttgttgatc |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2328739 |
cttgcgcgttttatggatgtagtttacaaagatgaagataactacacacgttctgaaggactaatgaagtcatatatcaaagctgttcttgttgatc |
2328835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 7 - 150
Target Start/End: Complemental strand, 14264909 - 14264766
Alignment:
| Q |
7 |
agaatgcaaaaaggaaattgcaattgcttggaaagttgtaaattcggaatgtcttaggccaaccaaagttccaatgccgtttctaacccgcgctctcaac |
106 |
Q |
| |
|
||||||| ||||| | ||||||| |||||||||| | |||| |||||||| ||||||||| ||||||||||| |||||||| ||||||||||| |
|
|
| T |
14264909 |
agaatgccaaaagagagttgcaatcgcttggaaagatataaacaaagaatgtctaaggccaaccgaagttccaatggattttctaactcgcgctctcaat |
14264810 |
T |
|
| Q |
107 |
cttgcgcgttttatggatgtagtttacaaagatgaagataacta |
150 |
Q |
| |
|
|| |||||||||||||||| |||||| |||| |||||||||| |
|
|
| T |
14264809 |
ttttcgcgttttatggatgtgttttacacagataaagataacta |
14264766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 7 - 188
Target Start/End: Original strand, 25834873 - 25835054
Alignment:
| Q |
7 |
agaatgcaaaaaggaaattgcaattgcttggaaagttgtaaattcggaatgtcttaggccaaccaaagttccaatgccgtttctaacccgcgctctcaac |
106 |
Q |
| |
|
||||||| | |||| |||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||| ||||| | || |||||||| |
|
|
| T |
25834873 |
agaatgccataagggaattgcaattgcttggaaagatataaatgaggaatgtcttaggccaaccaaagttccaatgccttttcttattcgtgctctcaat |
25834972 |
T |
|
| Q |
107 |
cttgcgcgttttatggatgtagtttacaaagatgaagataactacacacgttctgaaggactaatgaagtcatatatcaaag |
188 |
Q |
| |
|
|| |||||||||||||||| |||||||||| |||| || ||||||| |||||||||||| |||||| |||| |||||| |
|
|
| T |
25834973 |
ttttcgcgttttatggatgtgaattacaaagataaagacaattacacacattctgaaggacttatgaagaaatatgtcaaag |
25835054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 149
Target Start/End: Original strand, 31201610 - 31201728
Alignment:
| Q |
31 |
tgcttggaaagttgtaaattcggaatgtcttaggccaaccaaagttccaatgccgtttctaacccgcgctctcaaccttgcgcgttttatggatgtagtt |
130 |
Q |
| |
|
||||||||||| | | ||| ||||||| |||| ||||| ||||||||||||| ||||| || ||| ||| || || | |||||||||||||| ||| |
|
|
| T |
31201610 |
tgcttggaaagatatgaataaggaatgttttagaccaactgaagttccaatgccttttcttacacgcattctaaatctgtcacgttttatggatgtcgtt |
31201709 |
T |
|
| Q |
131 |
tacaaagatgaagataact |
149 |
Q |
| |
|
|| |||||| ||||||||| |
|
|
| T |
31201710 |
tataaagataaagataact |
31201728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 5e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 27 - 175
Target Start/End: Complemental strand, 20622002 - 20621854
Alignment:
| Q |
27 |
caattgcttggaaagttgtaaattcggaatgtcttaggccaaccaaagttccaatgccgtttctaacccgcgctctcaaccttgcgcgttttatggatgt |
126 |
Q |
| |
|
|||||| |||||||| | ||||| |||||||||||||||||||||||||||||||| ||| | || | | ||| |||||| |||||||||||||||| |
|
|
| T |
20622002 |
caattgtttggaaagatataaatgaagaatgtcttaggccaaccaaagttccaatgccttttatgacttgtgttcttaacctttcgcgttttatggatgt |
20621903 |
T |
|
| Q |
127 |
agtttacaaagatgaagataactacacacgttctgaaggactaatgaag |
175 |
Q |
| |
|
||||||||| | ||||||||||||||| |||| | ||||||||||| |
|
|
| T |
20621902 |
tgtttacaaaaacgaagataactacacagattctaacagactaatgaag |
20621854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 27 - 188
Target Start/End: Complemental strand, 20603013 - 20602852
Alignment:
| Q |
27 |
caattgcttggaaagttgtaaattcggaatgtcttaggccaaccaaagttccaatgccgtttctaacccgcgctctcaaccttgcgcgttttatggatgt |
126 |
Q |
| |
|
|||||| |||||||| | ||||| |||||||||||||||||||||||||||||||| ||| | | | | |||||| ||| |||||||||||||||| |
|
|
| T |
20603013 |
caattgtttggaaagatataaatgaagaatgtcttaggccaaccaaagttccaatgccttttatgatttgtgttctcaatctttcgcgttttatggatgt |
20602914 |
T |
|
| Q |
127 |
agtttacaaagatgaagataactacacacgttctgaaggactaatgaagtcatatatcaaag |
188 |
Q |
| |
|
|||||||| | ||||||||||||| |||| | |||||||||||| ||| ||| |||| |
|
|
| T |
20602913 |
tatttacaaaaacaaagataactacacggattctaacggactaatgaagacatttattaaag |
20602852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 31 - 203
Target Start/End: Original strand, 17183207 - 17183379
Alignment:
| Q |
31 |
tgcttggaaagttgtaaattcggaatgtcttaggccaaccaaagttccaatgccgtttctaacccgcgctctcaaccttgcgcgttttatggatgtagtt |
130 |
Q |
| |
|
||||||||||| | ||||| |||||||||| ||||||||||||||||| || |||||||| ||| | |||| || ||||||||||||||||| || |
|
|
| T |
17183207 |
tgcttggaaagatataaatgaagaatgtcttaagccaaccaaagttccaacgctttttctaactcgcattgtcaatctctcgcgttttatggatgtaatt |
17183306 |
T |
|
| Q |
131 |
tacaaagatgaagataactacacacgttctgaaggactaatgaagtcatatatcaaagctgttcttgttgatc |
203 |
Q |
| |
|
|| || ||||||| |||||||| | |||| ||||| ||||||| |||| || |||||| | ||||| |||| |
|
|
| T |
17183307 |
tataagcatgaagacaactacacgcattctaaaggagaaatgaagacatacattaaagctttgcttgtagatc |
17183379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University