View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5873-8 (Length: 202)
Name: Solexa-NF5873-8
Description: NF5873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5873-8 |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 7 - 198
Target Start/End: Original strand, 43163601 - 43163792
Alignment:
| Q |
7 |
aataaactgtttctataaactctccaaacagtttcacaagtacttacactttttccttttccaaagatatccagatgatgtttatgacagaacatggaca |
106 |
Q |
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| T |
43163601 |
aataaactgtttctataaactctccaaactgtttcacaagtacttacactttttccttttccaaagatatccagatgatgtttatgacagaacatggaca |
43163700 |
T |
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| Q |
107 |
ccttataactcaattgattggnnnnnnntaaacacttcactcaccatagaccaagcaccttcattcagctttacgccggtaccaccctccaa |
198 |
Q |
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| T |
43163701 |
ccttataactcaattgattggaaaaaaatagacacttcactcaccatagaccaagcaccttcattcagctttacgccggtaccaccctccaa |
43163792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 39 - 127
Target Start/End: Original strand, 43173306 - 43173394
Alignment:
| Q |
39 |
ttcacaagtacttacactttttccttttccaaagatatccagatgatgtttatgacagaacatggacaccttataactcaattgattgg |
127 |
Q |
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| T |
43173306 |
ttcacaagtacttacactttttccttttccaaagatatccagatgatatttatgacagaacatggacatcttataattcaattgattgg |
43173394 |
T |
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