View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5874-1 (Length: 77)

Name: Solexa-NF5874-1
Description: NF5874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5874-1
Solexa-NF5874-1
[»] chr5 (11 HSPs)
chr5 (1-76)||(37534021-37534096)
chr5 (1-76)||(37595245-37595320)
chr5 (1-76)||(37703589-37703664)
chr5 (4-76)||(37824816-37824888)
chr5 (1-76)||(37399976-37400051)
chr5 (1-76)||(37436628-37436703)
chr5 (1-76)||(37640793-37640868)
chr5 (4-76)||(37697708-37697780)
chr5 (4-76)||(37712545-37712617)
chr5 (1-51)||(37392125-37392175)
chr5 (1-57)||(37381499-37381555)
[»] chr4 (1 HSPs)
chr4 (2-72)||(24216905-24216975)


Alignment Details
Target: chr5 (Bit Score: 68; Significance: 5e-31; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 5e-31
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 37534096 - 37534021
Alignment:
Q  1 ttgtcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatctaattataaccttcgtggtcaac 76  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  37534096 ttgtcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatctaatgataaccttagtggtcaac 37534021  T

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Target: chr5; HSP #2
Raw Score: 64; E-Value: 1e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 37595320 - 37595245
Alignment:
Q  1 ttgtcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatctaattataaccttcgtggtcaac 76  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||    
T  37595320 ttgtcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatttaatgataaccttagtggtcaac 37595245  T

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Target: chr5; HSP #3
Raw Score: 64; E-Value: 1e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 37703664 - 37703589
Alignment:
Q  1 ttgtcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatctaattataaccttcgtggtcaac 76  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||    
T  37703664 ttgtcaagtgacatcctctctttacctaatcttcaaagattggatttgtcattcaattataaccttagtggtcaac 37703589  T

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Target: chr5; HSP #4
Raw Score: 61; E-Value: 7e-27
Query Start/End: Original strand, 4 - 76
Target Start/End: Complemental strand, 37824888 - 37824816
Alignment:
Q  4 tcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatctaattataaccttcgtggtcaac 76  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||    
T  37824888 tcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatttaatcataaccttagtggtcaac 37824816  T

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Target: chr5; HSP #5
Raw Score: 60; E-Value: 3e-26
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 37399976 - 37400051
Alignment:
Q  1 ttgtcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatctaattataaccttcgtggtcaac 76  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||| |||||||||    
T  37399976 ttgtcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatttaatcaaaaccttagtggtcaac 37400051  T

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Target: chr5; HSP #6
Raw Score: 60; E-Value: 3e-26
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 37436703 - 37436628
Alignment:
Q  1 ttgtcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatctaattataaccttcgtggtcaac 76  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||| |||||||||    
T  37436703 ttgtcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatttaatcaaaaccttagtggtcaac 37436628  T

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Target: chr5; HSP #7
Raw Score: 60; E-Value: 3e-26
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 37640868 - 37640793
Alignment:
Q  1 ttgtcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatctaattataaccttcgtggtcaac 76  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||| |||||||||    
T  37640868 ttgtcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatttaatcaaaaccttagtggtcaac 37640793  T

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Target: chr5; HSP #8
Raw Score: 57; E-Value: 2e-24
Query Start/End: Original strand, 4 - 76
Target Start/End: Complemental strand, 37697780 - 37697708
Alignment:
Q  4 tcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatctaattataaccttcgtggtcaac 76  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||| |||||||||    
T  37697780 tcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatttaatcaaaaccttagtggtcaac 37697708  T

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Target: chr5; HSP #9
Raw Score: 57; E-Value: 2e-24
Query Start/End: Original strand, 4 - 76
Target Start/End: Complemental strand, 37712617 - 37712545
Alignment:
Q  4 tcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatctaattataaccttcgtggtcaac 76  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||| |||||||||    
T  37712617 tcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatttaatcaaaaccttagtggtcaac 37712545  T

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Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 37392125 - 37392175
Alignment:
Q  1 ttgtcaagtgacatcctctctttacctaatcttcaaagattggatttgtca 51  Q
    |||||||||| |||||||||||||||||||||||||||| | |||||||||    
T  37392125 ttgtcaagtgccatcctctctttacctaatcttcaaagactagatttgtca 37392175  T

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Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 37381499 - 37381555
Alignment:
Q  1 ttgtcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatctaat 57  Q
    |||||||||||||||||||||||||||||||| |||| | | ||||| |||||||||    
T  37381499 ttgtcaagtgacatcctctctttacctaatctccaaacactagatttatcatctaat 37381555  T

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Target: chr4 (Bit Score: 39; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 24216905 - 24216975
Alignment:
Q  2 tgtcaagtgacatcctctctttacctaatcttcaaagattggatttgtcatctaattataaccttcgtggt 72  Q
    ||||||||||||||||||||||||| |||||||||| | | ||||||||||| ||| |  |||||||||||    
T  24216905 tgtcaagtgacatcctctctttaccaaatcttcaaaaactagatttgtcatcgaatcaagaccttcgtggt 24216975  T

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