View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5874-15 (Length: 43)

Name: Solexa-NF5874-15
Description: NF5874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5874-15
Solexa-NF5874-15
[»] chr8 (1 HSPs)
chr8 (9-43)||(3996232-3996266)
[»] chr6 (2 HSPs)
chr6 (9-43)||(27619611-27619645)
chr6 (9-43)||(27635221-27635255)
[»] chr5 (2 HSPs)
chr5 (9-43)||(15649007-15649041)
chr5 (9-43)||(15664383-15664417)
[»] chr2 (4 HSPs)
chr2 (9-43)||(34273966-34274000)
chr2 (9-43)||(34300980-34301014)
chr2 (9-36)||(15706684-15706711)
chr2 (9-43)||(4728289-4728323)
[»] scaffold0062 (1 HSPs)
scaffold0062 (9-36)||(55596-55623)
[»] scaffold0184 (1 HSPs)
scaffold0184 (9-43)||(24678-24712)
[»] scaffold0131 (1 HSPs)
scaffold0131 (9-43)||(24295-24329)
[»] scaffold0078 (1 HSPs)
scaffold0078 (9-43)||(48132-48166)
[»] chr7 (1 HSPs)
chr7 (9-43)||(18136763-18136797)
[»] chr3 (4 HSPs)
chr3 (9-43)||(6186982-6187016)
chr3 (9-43)||(6211749-6211783)
chr3 (9-43)||(18325324-18325358)
chr3 (9-43)||(18340421-18340455)


Alignment Details
Target: chr8 (Bit Score: 31; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 3996266 - 3996232
Alignment:
Q  9 agatcaagcacatggaaacaacgcatcatagccat 43  Q
    |||||||||||||||||||||||||||| ||||||    
T  3996266 agatcaagcacatggaaacaacgcatcacagccat 3996232  T

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Target: chr6 (Bit Score: 31; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 27619611 - 27619645
Alignment:
Q  9 agatcaagcacatggaaacaacgcatcatagccat 43  Q
    |||||||||||||||||||||||||||||| ||||    
T  27619611 agatcaagcacatggaaacaacgcatcataaccat 27619645  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 27635221 - 27635255
Alignment:
Q  9 agatcaagcacatggaaacaacgcatcatagccat 43  Q
    |||||||||||||||||||||||||||||| ||||    
T  27635221 agatcaagcacatggaaacaacgcatcataaccat 27635255  T

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Target: chr5 (Bit Score: 31; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 15649007 - 15649041
Alignment:
Q  9 agatcaagcacatggaaacaacgcatcatagccat 43  Q
    |||||||||||||||||||||||||||| ||||||    
T  15649007 agatcaagcacatggaaacaacgcatcacagccat 15649041  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 15664383 - 15664417
Alignment:
Q  9 agatcaagcacatggaaacaacgcatcatagccat 43  Q
    |||||||||||||||||||||||||||| ||||||    
T  15664383 agatcaagcacatggaaacaacgcatcacagccat 15664417  T

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Target: chr2 (Bit Score: 31; Significance: 0.000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 34274000 - 34273966
Alignment:
Q  9 agatcaagcacatggaaacaacgcatcatagccat 43  Q
    |||||||||||||||||||||||||||| ||||||    
T  34274000 agatcaagcacatggaaacaacgcatcacagccat 34273966  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 34301014 - 34300980
Alignment:
Q  9 agatcaagcacatggaaacaacgcatcatagccat 43  Q
    |||||||||||||||||||||||||||| ||||||    
T  34301014 agatcaagcacatggaaacaacgcatcacagccat 34300980  T

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Target: chr2; HSP #3
Raw Score: 28; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 36
Target Start/End: Original strand, 15706684 - 15706711
Alignment:
Q  9 agatcaagcacatggaaacaacgcatca 36  Q
    ||||||||||||||||||||||||||||    
T  15706684 agatcaagcacatggaaacaacgcatca 15706711  T

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Target: chr2; HSP #4
Raw Score: 27; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 4728289 - 4728323
Alignment:
Q  9 agatcaagcacatggaaacaacgcatcatagccat 43  Q
    ||||||||||||||||||||| |||||| ||||||    
T  4728289 agatcaagcacatggaaacaaagcatcacagccat 4728323  T

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Target: scaffold0062 (Bit Score: 28; Significance: 0.0000001; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 28; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 36
Target Start/End: Original strand, 55596 - 55623
Alignment:
Q  9 agatcaagcacatggaaacaacgcatca 36  Q
    ||||||||||||||||||||||||||||    
T  55596 agatcaagcacatggaaacaacgcatca 55623  T

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Target: scaffold0184 (Bit Score: 27; Significance: 0.0000006; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 27; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 24678 - 24712
Alignment:
Q  9 agatcaagcacatggaaacaacgcatcatagccat 43  Q
    ||||||||||||||||| |||||||||| ||||||    
T  24678 agatcaagcacatggaaccaacgcatcacagccat 24712  T

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Target: scaffold0131 (Bit Score: 27; Significance: 0.0000006; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 27; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 24329 - 24295
Alignment:
Q  9 agatcaagcacatggaaacaacgcatcatagccat 43  Q
    ||||||||||||||||||||| |||||| ||||||    
T  24329 agatcaagcacatggaaacaaagcatcacagccat 24295  T

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Target: scaffold0078 (Bit Score: 27; Significance: 0.0000006; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 27; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 48166 - 48132
Alignment:
Q  9 agatcaagcacatggaaacaacgcatcatagccat 43  Q
    ||||||||||||||||| |||||||||| ||||||    
T  48166 agatcaagcacatggaaccaacgcatcacagccat 48132  T

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Target: chr7 (Bit Score: 27; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 27; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 18136797 - 18136763
Alignment:
Q  9 agatcaagcacatggaaacaacgcatcatagccat 43  Q
    ||||||||||||||||||||| |||||| ||||||    
T  18136797 agatcaagcacatggaaacaaagcatcacagccat 18136763  T

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Target: chr3 (Bit Score: 27; Significance: 0.0000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 27; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 6187016 - 6186982
Alignment:
Q  9 agatcaagcacatggaaacaacgcatcatagccat 43  Q
    ||||||||||||||||||||| |||||| ||||||    
T  6187016 agatcaagcacatggaaacaaagcatcacagccat 6186982  T

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Target: chr3; HSP #2
Raw Score: 27; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 6211783 - 6211749
Alignment:
Q  9 agatcaagcacatggaaacaacgcatcatagccat 43  Q
    ||||||||||||||||||||| |||||| ||||||    
T  6211783 agatcaagcacatggaaacaaagcatcacagccat 6211749  T

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Target: chr3; HSP #3
Raw Score: 27; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 18325358 - 18325324
Alignment:
Q  9 agatcaagcacatggaaacaacgcatcatagccat 43  Q
    ||||||||||||||||||||| |||||| ||||||    
T  18325358 agatcaagcacatggaaacaaagcatcacagccat 18325324  T

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Target: chr3; HSP #4
Raw Score: 27; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 18340455 - 18340421
Alignment:
Q  9 agatcaagcacatggaaacaacgcatcatagccat 43  Q
    ||||||||||||||||||||| |||||| ||||||    
T  18340455 agatcaagcacatggaaacaaagcatcacagccat 18340421  T

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