View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5874-2 (Length: 164)
Name: Solexa-NF5874-2
Description: NF5874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5874-2 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 139; Significance: 5e-73; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 5e-73
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 55453169 - 55453006
Alignment:
| Q |
1 |
ggaacagcacagagacatacttatgcggtgttcgagctcctaatagaactgcagtgaacctgtatccaacnnnnnnnaccataactccacaaggaactca |
100 |
Q |
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| T |
55453169 |
ggaacagcacagagacatacttatgcggtgttcgagctcctaatagaactgcagttaacctgtatccaactttttttaccataactccacaaggaactca |
55453070 |
T |
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| Q |
101 |
ggatctggaaatacaaatcaatgtcactcaaccaagtgaagattttagctttggtgaaattgtt |
164 |
Q |
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| T |
55453069 |
ggatctggaaatacaaatcaatgtcactcaaccaagtgaagattttagctttggtgaaattgtt |
55453006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 9e-50
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 55705153 - 55705317
Alignment:
| Q |
1 |
ggaacagcacagagacatacttatgcggtgttcgagctcctaatagaactgcagtgaacctgtatccaacnnnnnnn-accataactccacaaggaactc |
99 |
Q |
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| T |
55705153 |
ggaacagcacagagacatacttgtgcggtgttctagctcctaatggaactgcagttaacttgtatccaacttttttttaccataactccacatagaacac |
55705252 |
T |
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| Q |
100 |
aggatctggaaatacaaatcaatgtcactcaaccaagtgaagattttagctttggtgaaattgtt |
164 |
Q |
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| T |
55705253 |
gggatctggaaatacaaatcaatgtcactcaaccaagtgaagattttagctttggtgaaattgtt |
55705317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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