View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5874-5 (Length: 145)
Name: Solexa-NF5874-5
Description: NF5874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5874-5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 113; Significance: 1e-57; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 1e-57
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 16065549 - 16065695
Alignment:
| Q |
1 |
agtgagatgaagttgattagttacattttaaaaactagacattgtcccatttaatttcgttcctttccattccaat----caaacatacccagaataatt |
96 |
Q |
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| T |
16065549 |
agtgaaatgaaattgattagttacattttaaaaactagacattgtcccatttaatttcgttcctttccattccaatcaaacaaacatacccagaataatt |
16065648 |
T |
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| Q |
97 |
tgatatttcaattcaagtggtcccttccctacactttttaatttgattg |
145 |
Q |
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| T |
16065649 |
tgata--tcaattcaagtggtcccttccctacactttttaatttgattg |
16065695 |
T |
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