View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5874-6 (Length: 143)
Name: Solexa-NF5874-6
Description: NF5874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5874-6 |
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Alignment Details
Target: chr4 (Bit Score: 79; Significance: 3e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 5 - 83
Target Start/End: Complemental strand, 41400002 - 41399924
Alignment:
| Q |
5 |
acatcaccgtcccataaaccagtccaaaaagacggcgttaacggcatctctttaaaacagttcatatcatattccgtta |
83 |
Q |
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| T |
41400002 |
acatcaccgtcccataaaccagtccaaaaagacggcgttaacggcatctctttaaaacagttcatatcatattccgtta |
41399924 |
T |
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Target: chr4; HSP #2
Raw Score: 55; E-Value: 6e-23
Query Start/End: Original strand, 5 - 83
Target Start/End: Complemental strand, 41407112 - 41407034
Alignment:
| Q |
5 |
acatcaccgtcccataaaccagtccaaaaagacggcgttaacggcatctctttaaaacagttcatatcatattccgtta |
83 |
Q |
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||||| |||||||| |||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||| |
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| T |
41407112 |
acatctccgtcccacaaaccagtccaaaaagacggcgttaaaggcatctctttgaaacaactcatatcatattccgtta |
41407034 |
T |
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