View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5875-1 (Length: 294)

Name: Solexa-NF5875-1
Description: NF5875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5875-1
Solexa-NF5875-1
[»] chr3 (11 HSPs)
chr3 (1-294)||(19413047-19413340)
chr3 (8-288)||(19423459-19423741)
chr3 (1-280)||(19435760-19436042)
chr3 (200-279)||(18102358-18102437)
chr3 (206-283)||(17949299-17949377)
chr3 (200-274)||(19379797-19379872)
chr3 (200-279)||(19398640-19398719)
chr3 (218-283)||(19418872-19418938)
chr3 (200-245)||(18107372-18107417)
chr3 (200-248)||(18020972-18021020)
chr3 (200-248)||(19420699-19420747)
[»] chr4 (2 HSPs)
chr4 (173-285)||(15529889-15530002)
chr4 (8-96)||(15531434-15531521)
[»] chr8 (1 HSPs)
chr8 (199-283)||(8457372-8457457)


Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 19413340 - 19413047
Alignment:
Q  1 cagagaggaagatctagttcaaatgagttatgatttgttaagaaattcttgctatagtgtggttatataagatgttggcacatgggaaagtttgaaaaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  19413340 cagagaggaagatctagttcaaatgagttatgatttgttaagagattcttgctgtagtgtggttatataagatgttggcacatgggaaagtttgaaaaat 19413241  T
Q  101 gcaagggaatactttgaattttgaagtctgtgataagaaagtatgtggacaacataggctatgattgataagaaaattaaatagcttcaaataaaaagaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||| |||||||    
T  19413240 gcaagggaatactttgaattttgaagtctgtgataagaaagtatgtggacaacataggctatgatttatagaaaaattaaatagcttcaaattaaaagaa 19413141  T
Q  201 agactttgaaaaagcaggaaagacttggaattatagaatttctttgaagctcatgttttaaaattggttccaaattatttgaaccttagcatga 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19413140 agactttgaaaaagcaggaaagacttggaattatagaatttctttgaagctcatgttttaaaattggttccaaattatttgaaccttagcatga 19413047  T

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Target: chr3; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 8 - 288
Target Start/End: Complemental strand, 19423741 - 19423459
Alignment:
Q  8 gaagatctagttcaaatgagtt-atgatttgttaagaaattcttgctatagtgtggttatataagatgttggcacatgggaaagtttgaaaaatgcaagg 106  Q
    ||||||||| ||||||||| || |||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  19423741 gaagatctaattcaaatgaatttatgatttgttaagagattcttgcta--gtgtggttatataagatgttggcacatgggaaagtttgaaaaatgcacgg 19423644  T
Q  107 gaatactttgaattttgaagtctgtgataagaaagtatgtggacaacataggctatgattgataagaaaattaaa---tagcttcaaataaaaagaaaga 203  Q
    ||| |||| |||||||||||||||| |||||||||||| ||||||||||||| | |||||||||  || ||||||   ||||| || || ||||| ||||    
T  19423643 gaagacttggaattttgaagtctgtcataagaaagtatttggacaacatagggtctgattgatagaaatattaaatattagctccacattaaaagcaaga 19423544  T
Q  204 ctttgaaaaagcaggaaagacttggaattatagaatttctttgaagctcatgttttaaaattggttccaaattatttgaacctta 288  Q
    |||||| |||| |||||||||||||||||| |  ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  19423543 ctttgataaagtaggaaagacttggaattaaaccatttctttgaacctcatgttttaaaattggttccaaattatttgaacctta 19423459  T

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Target: chr3; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 19436042 - 19435760
Alignment:
Q  1 cagagaggaagatctagttcaaatgag-ttatgatttgttaagaaattcttgctatagtgtggttatataagatgttggcacatgggaaagtttgaaaaa 99  Q
    |||||| ||||||||| |||||||| | || ||| ||||||||| ||||||||||  |||||||||||||||||||||||||||| ||||||||||||||    
T  19436042 cagagaagaagatctaattcaaatgggattgtgacttgttaagagattcttgcta--gtgtggttatataagatgttggcacatgagaaagtttgaaaaa 19435945  T
Q  100 tgcaagggaatactttgaattttgaagtctgtgataagaaagta----tgtggacaacataggctatgattgataagaaaattaaatagcttcaaataaa 195  Q
    |||| ||||| ||||||||||||||||||| |||||||||||||    |||||| ||||| || | |||||||||  |||||||||||||| ||||| ||    
T  19435944 tgcacgggaagactttgaattttgaagtctatgataagaaagtacgtatgtggagaacatggggtctgattgatagaaaaattaaatagctccaaattaa 19435845  T
Q  196 aagaaagactttgaaaaagcaggaaagacttggaattatagaatttctttgaagctcatgttttaaaattggttccaaattattt 280  Q
    ||| ||||||||||||||| |||||||||||||||||||||||| |||| | | |||||||||||||||||||| ||||||||||    
T  19435844 aagtaagactttgaaaaagtaggaaagacttggaattatagaatctcttcgtacctcatgttttaaaattggtttcaaattattt 19435760  T

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Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 200 - 279
Target Start/End: Complemental strand, 18102437 - 18102358
Alignment:
Q  200 aagactttgaaaaagcaggaaagacttggaattatagaatttctttgaagctcatgttttaaaattggttccaaattatt 279  Q
    ||||||||||| | ||||| |||||||||||| ||| |||||||||||| ||||||||||||| ||||| ||||||||||    
T  18102437 aagactttgaataggcagggaagacttggaataatataatttctttgaacctcatgttttaaacttggtgccaaattatt 18102358  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 206 - 283
Target Start/End: Complemental strand, 17949377 - 17949299
Alignment:
Q  206 ttgaaaaagcaggaaagacttggaattatagaatttctttg-aagctcatgttttaaaattggttccaaattatttgaa 283  Q
    ||||||| ||| ||||||||| |||||||| |||||||||| || ||||||||||||| ||||| ||||||||||||||    
T  17949377 ttgaaaaggcaagaaagacttagaattataaaatttctttgaaacctcatgttttaaacttggtgccaaattatttgaa 17949299  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 200 - 274
Target Start/End: Complemental strand, 19379872 - 19379797
Alignment:
Q  200 aagactttgaaaaagcaggaaagacttggaattatagaatttcttt-gaagctcatgttttaaaattggttccaaa 274  Q
    ||||||||||||| ||| |||||||||||||||||||||||| |||  || ||||||||||||| ||||| |||||    
T  19379872 aagactttgaaaaggcaagaaagacttggaattatagaatttatttcaaacctcatgttttaaacttggtgccaaa 19379797  T

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Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 200 - 279
Target Start/End: Complemental strand, 19398719 - 19398640
Alignment:
Q  200 aagactttgaaaaagcaggaaagacttggaattatagaatttctttgaagctcatgttttaaaattggttccaaattatt 279  Q
    ||||||||||| | ||||| ||||||| |||| ||| |||||||||||| |||| |||||||| ||||| ||||||||||    
T  19398719 aagactttgaataggcagggaagactttgaataatataatttctttgaacctcaagttttaaacttggtaccaaattatt 19398640  T

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Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 218 - 283
Target Start/End: Complemental strand, 19418938 - 19418872
Alignment:
Q  218 gaaagacttggaattatagaatttctttg-aagctcatgttttaaaattggttccaaattatttgaa 283  Q
    |||||||||||||||||| |||||||||| || ||||| ||||||| ||||| ||||||||||||||    
T  19418938 gaaagacttggaattataaaatttctttgaaacctcatattttaaatttggtgccaaattatttgaa 19418872  T

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Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 245
Target Start/End: Complemental strand, 18107417 - 18107372
Alignment:
Q  200 aagactttgaaaaagcaggaaagacttggaattatagaatttcttt 245  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||    
T  18107417 aagactttgaaaaggcaagaaagacttggaattatagaatttcttt 18107372  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 248
Target Start/End: Complemental strand, 18021020 - 18020972
Alignment:
Q  200 aagactttgaaaaagcaggaaagacttggaattatagaatttctttgaa 248  Q
    ||||||||||||| ||| | |||||||||||||||| ||||||||||||    
T  18021020 aagactttgaaaaggcaaggaagacttggaattatataatttctttgaa 18020972  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 248
Target Start/End: Complemental strand, 19420747 - 19420699
Alignment:
Q  200 aagactttgaaaaagcaggaaagacttggaattatagaatttctttgaa 248  Q
    ||||||||||||| |||   |||||||||||||||||||||||||||||    
T  19420747 aagactttgaaaacgcatagaagacttggaattatagaatttctttgaa 19420699  T

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Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 173 - 285
Target Start/End: Complemental strand, 15530002 - 15529889
Alignment:
Q  173 aaaattaaatagcttcaaataaaaagaaagactttgaaaaagcaggaaagacttggaattatagaatttctttg-aagctcatgttttaaaattggttcc 271  Q
    |||||||||||||| ||||| ||||| ||||||||||||||| |||||||||||||||||||| |||||||||| || ||||||||||||| |||||||     
T  15530002 aaaattaaatagctccaaattaaaagcaagactttgaaaaaggaggaaagacttggaattatacaatttctttgaaacctcatgttttaaatttggttca 15529903  T
Q  272 aaattatttgaacc 285  Q
    ||||||| ||||||    
T  15529902 aaattatgtgaacc 15529889  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 15531521 - 15531434
Alignment:
Q  8 gaagatctagttcaaatgag-ttatgatttgttaagaaattcttgctatagtgtggttatataagatgttggcacatgggaaagtttgaa 96  Q
    ||||||||| |||||||| | |||||||||  ||||| ||||| ||||  ||||||||||||||||||||||||||||||||||||||||    
T  15531521 gaagatctaattcaaatgggattatgatttactaagagattctagcta--gtgtggttatataagatgttggcacatgggaaagtttgaa 15531434  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 283
Target Start/End: Complemental strand, 8457457 - 8457372
Alignment:
Q  199 aaagactttga-aaaagcaggaaagacttggaattatagaatttctttgaagctcatgttttaaaattggttccaaattatttgaa 283  Q
    ||||||||||| ||||||| |  ||||||  |||||||||||||||||||| ||||||||||||| ||||| || |||| ||||||    
T  8457457 aaagactttgagaaaagcaaggcagacttaaaattatagaatttctttgaacctcatgttttaaacttggtccccaattgtttgaa 8457372  T

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