View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5875-10 (Length: 200)
Name: Solexa-NF5875-10
Description: NF5875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5875-10 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 3e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 3e-99
Query Start/End: Original strand, 8 - 198
Target Start/End: Original strand, 42534644 - 42534834
Alignment:
| Q |
8 |
gatgggagaagaaccagaaccaatttgagcaacaaaaccagttttagcaactggatatgtataaggtataccaagtttgtcaagttcactgcggataaga |
107 |
Q |
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| T |
42534644 |
gatgggagaagaaccagaaccaatttgagcaacaataccagttttagcaactggatatgtataaggtataccaagtttgtcaagttcactgcggataaga |
42534743 |
T |
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| Q |
108 |
gcacttgtgttgtgttcttggaaagccaattctgggtgttgatgaatctctcttctcactgaaaccaaccaatctttttccttctgtgctg |
198 |
Q |
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| T |
42534744 |
gcacttgtgttgtgttcttggaaagccaattctgggtgttgatgaatctctcttctcactgaaaccaaccaatctttttccttctgggctg |
42534834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 85 - 183
Target Start/End: Original strand, 42539836 - 42539931
Alignment:
| Q |
85 |
tgtcaagttcactgcggataagagcacttgtgttgtgttcttggaaagccaattctgggtgttgatgaatctctcttctcactgaaaccaaccaatctt |
183 |
Q |
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| T |
42539836 |
tgtcaagttccttgcgtataaaagtacttgtgtt---ttcttgaaaggctaattctgggtgttgatgaatctcccttctcactgaaaccaaccaatctt |
42539931 |
T |
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