View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5875-12 (Length: 164)
Name: Solexa-NF5875-12
Description: NF5875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5875-12 |
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Alignment Details
Target: chr1 (Bit Score: 119; Significance: 4e-61; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 4e-61
Query Start/End: Original strand, 8 - 158
Target Start/End: Complemental strand, 6217296 - 6217151
Alignment:
| Q |
8 |
tccaatatacattttaattaaatgagaaatccattagttctttataactcaacatttgagagctttgaaacgtagaaaagacactcaactcaatacagtc |
107 |
Q |
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| T |
6217296 |
tccaatatacattttaattaaatgagaaatccattagttctttataactcaacatttgagagctttgtaacgtagaaaagacactcaactcactacagtc |
6217197 |
T |
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| Q |
108 |
tacaacataaaaattatcttaatgttgtcacaaaaagtgctattgtggtct |
158 |
Q |
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| T |
6217196 |
tacaac-----aattatcttaatgttgtcacaaaaagtactattgtggtct |
6217151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 8e-44
Query Start/End: Original strand, 8 - 158
Target Start/End: Complemental strand, 6211443 - 6211292
Alignment:
| Q |
8 |
tccaatatacattttaattaaatgagaaatccattagttctttata--actcaacatttgagagctttgaaacgtagaaaagacactcaactcaatacag |
105 |
Q |
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|||||| ||||||||||||||||||||||||||||||| || |||| |||||| ||| |||||||||||||| ||||||||||||||| ||| |||| |
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| T |
6211443 |
tccaatttacattttaattaaatgagaaatccattagtgctatatataactcaaaattggagagctttgaaacatagaaaagacactca-ctcgctacat |
6211345 |
T |
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| Q |
106 |
tctacaacataaaaattatcttaatgttgtcacaaaaagtgctattgtggtct |
158 |
Q |
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| T |
6211344 |
tctacaacataaaaatcatcttaatgttgtcacaaaaagtactattgtggtct |
6211292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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