View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5875-13 (Length: 155)
Name: Solexa-NF5875-13
Description: NF5875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5875-13 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 136; Significance: 3e-71; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 3e-71
Query Start/End: Original strand, 4 - 155
Target Start/End: Complemental strand, 5282501 - 5282350
Alignment:
| Q |
4 |
aagaagaaaaagattgagagaaaataaaatgttgaataagtatatgaaaattagagatgttcatatacaatcactcattataaaaatgggtaatagtttg |
103 |
Q |
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| T |
5282501 |
aagaagaaaaagattaagagaaaataaaatgttgaataagtatatgaaaatcagagatgttgatatacaatcactcattataaaaatgtgtaatagtttg |
5282402 |
T |
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| Q |
104 |
aaattgatatacaatatatttatgtttatttagagacaaacttggaataatg |
155 |
Q |
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| T |
5282401 |
aaattgatatacaatatatttatgtttatttagagacaaacttggaataatg |
5282350 |
T |
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Target: chr7 (Bit Score: 28; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 24 - 63
Target Start/End: Complemental strand, 40113675 - 40113636
Alignment:
| Q |
24 |
aaaataaaatgttgaataagtatatgaaaattagagatgt |
63 |
Q |
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| T |
40113675 |
aaaataaaatgttgaatgattatatgaaatttagagatgt |
40113636 |
T |
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