View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5875-15 (Length: 145)

Name: Solexa-NF5875-15
Description: NF5875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5875-15
Solexa-NF5875-15
[»] chr5 (2 HSPs)
chr5 (5-145)||(7581123-7581263)
chr5 (54-125)||(41583584-41583655)
[»] chr8 (2 HSPs)
chr8 (55-127)||(24733211-24733283)
chr8 (55-125)||(35209927-35209997)
[»] chr7 (2 HSPs)
chr7 (55-133)||(2347450-2347528)
chr7 (67-133)||(44677384-44677450)
[»] chr2 (3 HSPs)
chr2 (31-133)||(43791885-43791987)
chr2 (55-91)||(22440138-22440174)
chr2 (55-127)||(34233917-34233989)
[»] chr1 (3 HSPs)
chr1 (55-125)||(28441604-28441674)
chr1 (64-125)||(23931209-23931270)
chr1 (70-125)||(9964349-9964404)
[»] chr3 (1 HSPs)
chr3 (74-127)||(4305156-4305209)
[»] chr4 (1 HSPs)
chr4 (67-127)||(16556006-16556066)


Alignment Details
Target: chr5 (Bit Score: 113; Significance: 1e-57; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 1e-57
Query Start/End: Original strand, 5 - 145
Target Start/End: Original strand, 7581123 - 7581263
Alignment:
Q  5 caaaggtaatataatattaagagaagtgttaacgaatgtccttggaatgttctttaagtacctttaatagtaagttttcataaaaattcgtgtatttaat 104  Q
    ||||||||||||||||||||||||||||||||||  ||||||||| |||  ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  7581123 caaaggtaatataatattaagagaagtgttaacgggtgtccttgggatgccctttaagtatctttaatagtaagttttcataaaaattcgtgtatttaat 7581222  T
Q  105 acattagaatttgtaatatttgatattttgttggaataatt 145  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  7581223 acattagaatttgtaatatttgattttttgttggaataatt 7581263  T

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Target: chr5; HSP #2
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 54 - 125
Target Start/End: Complemental strand, 41583655 - 41583584
Alignment:
Q  54 ttctttaagtacctttaatagtaagttttcataaaaattcgtgtatttaatacattagaatttgtaatattt 125  Q
    ||||||||| | ||| |||||||| |||| || |||||  ||||||| ||| |||| |||||||||||||||    
T  41583655 ttctttaagaatcttcaatagtaaatttttatgaaaatctgtgtattcaatgcattggaatttgtaatattt 41583584  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 55 - 127
Target Start/End: Complemental strand, 24733283 - 24733211
Alignment:
Q  55 tctttaagtacctttaatagtaagttttcataaaaattcgtgtatttaatacattagaatttgtaatatttga 127  Q
    |||||||||||||||||||||||||||| ||||||||| ||||| | ||| || |  ||||||||| ||||||    
T  24733283 tctttaagtacctttaatagtaagtttttataaaaatttgtgtaatcaatgcactgtaatttgtaacatttga 24733211  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 55 - 125
Target Start/End: Original strand, 35209927 - 35209997
Alignment:
Q  55 tctttaagtacctttaatagtaagttttcataaaaattcgtgtatttaatacattagaatttgtaatattt 125  Q
    |||||||| ||||||||||| ||||||| || |||||| ||||  |||||||||| |||||||||| ||||    
T  35209927 tctttaagaacctttaataggaagtttttattaaaatttgtgtgattaatacattggaatttgtaacattt 35209997  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 133
Target Start/End: Complemental strand, 2347528 - 2347450
Alignment:
Q  55 tctttaagtacctttaatagtaagttttcataaaaattcgtgtatttaatacattagaatttgtaatatttgatatttt 133  Q
    |||||||| |||||||||||||| |||| || ||||||  |||| | ||| ||||  ||||||||||||||||| ||||    
T  2347528 tctttaagcacctttaatagtaaatttttattaaaatttatgtaatcaatgcattgaaatttgtaatatttgatttttt 2347450  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 133
Target Start/End: Complemental strand, 44677450 - 44677384
Alignment:
Q  67 tttaatagtaagttttcataaaaattcgtgtatttaatacattagaatttgtaatatttgatatttt 133  Q
    ||||||||||| |||| ||| |||||| | |||||||| ||||  |||||||||||||||| |||||    
T  44677450 tttaatagtaaatttttatagaaattcatatatttaatgcattgtaatttgtaatatttgacatttt 44677384  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 133
Target Start/End: Original strand, 43791885 - 43791987
Alignment:
Q  31 tgttaacgaatgtccttggaatgttctttaagtacctttaatagtaagttttcataaaaattcgtgtatttaatacattagaatttgtaatatttgatat 130  Q
    ||||||||| |||| | |||||  | |||||  |||||||||| |||||||| ||||||||   | || ||||| ||||||||||||||| ||||||| |    
T  43791885 tgttaacgagtgtcatcggaatactttttaaacacctttaataataagtttttataaaaatctatataattaatgcattagaatttgtaacatttgattt 43791984  T
Q  131 ttt 133  Q
    |||    
T  43791985 ttt 43791987  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 91
Target Start/End: Original strand, 22440138 - 22440174
Alignment:
Q  55 tctttaagtacctttaatagtaagttttcataaaaat 91  Q
    |||||||||||||||||||||||||||| || |||||    
T  22440138 tctttaagtacctttaatagtaagtttttatgaaaat 22440174  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 127
Target Start/End: Original strand, 34233917 - 34233989
Alignment:
Q  55 tctttaagtacctttaatagtaagttttcataaaaattcgtgtatttaatacattagaatttgtaatatttga 127  Q
    |||||||| |||||||||||||| |||| ||  ||||| ||||| | ||| ||||  ||||||||||||||||    
T  34233917 tctttaagcacctttaatagtaaatttttattcaaatttgtgtaatcaatgcattgaaatttgtaatatttga 34233989  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 125
Target Start/End: Complemental strand, 28441674 - 28441604
Alignment:
Q  55 tctttaagtacctttaatagtaagttttcataaaaattcgtgtatttaatacattagaatttgtaatattt 125  Q
    |||||||  ||||||||||||||||||| ||||||||  ||||| ||||||  || |||||||||| ||||    
T  28441674 tctttaaacacctttaatagtaagtttttataaaaatatgtgtaattaatattttggaatttgtaacattt 28441604  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 64 - 125
Target Start/End: Original strand, 23931209 - 23931270
Alignment:
Q  64 acctttaatagtaagttttcataaaaattcgtgtatttaatacattagaatttgtaatattt 125  Q
    |||||||||||||  |||| || ||||||||||||||| ||  |||||||||||||| ||||    
T  23931209 acctttaatagtagatttttatgaaaattcgtgtattttattaattagaatttgtaacattt 23931270  T

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Target: chr1; HSP #3
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 125
Target Start/End: Original strand, 9964349 - 9964404
Alignment:
Q  70 aatagtaagttttcataaaaattcgtgtatttaatacattagaatttgtaatattt 125  Q
    |||||||  |||||||  ||||| ||||||| ||| ||||||||||||||||||||    
T  9964349 aatagtatattttcatgtaaatttgtgtattcaatgcattagaatttgtaatattt 9964404  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 74 - 127
Target Start/End: Original strand, 4305156 - 4305209
Alignment:
Q  74 gtaagttttcataaaaattcgtgtatttaatacattagaatttgtaatatttga 127  Q
    ||||||||| || |||| ||||||| | ||||||||||||||| ||||||||||    
T  4305156 gtaagtttttatgaaaaatcgtgtaatcaatacattagaatttataatatttga 4305209  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 127
Target Start/End: Complemental strand, 16556066 - 16556006
Alignment:
Q  67 tttaatagtaagttttcataaaaattcgtgtatttaatacattagaatttgtaatatttga 127  Q
    ||||||| |||||||| ||||||||| ||||| | ||| ||||  ||||||||||||||||    
T  16556066 tttaataataagtttttataaaaatttgtgtaatcaatgcattgaaatttgtaatatttga 16556006  T

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