View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5875-19 (Length: 143)

Name: Solexa-NF5875-19
Description: NF5875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5875-19
Solexa-NF5875-19
[»] chr8 (19 HSPs)
chr8 (1-143)||(38181624-38181766)
chr8 (1-131)||(40125289-40125419)
chr8 (1-131)||(18875782-18875912)
chr8 (1-143)||(19167219-19167361)
chr8 (1-143)||(33417102-33417243)
chr8 (1-143)||(17020923-17021065)
chr8 (1-143)||(17551360-17551502)
chr8 (1-131)||(1910347-1910478)
chr8 (1-143)||(1808018-1808160)
chr8 (1-90)||(44925356-44925445)
chr8 (1-131)||(15950947-15951076)
chr8 (1-91)||(17953407-17953497)
chr8 (1-131)||(17026499-17026620)
chr8 (1-131)||(17556991-17557112)
chr8 (2-75)||(36684157-36684230)
chr8 (2-85)||(15875132-15875215)
chr8 (52-138)||(18260461-18260547)
chr8 (41-85)||(7002261-7002305)
chr8 (44-91)||(17794090-17794137)
[»] chr3 (19 HSPs)
chr3 (1-131)||(46964583-46964713)
chr3 (1-131)||(3419560-3419690)
chr3 (1-131)||(7570609-7570740)
chr3 (1-131)||(23660857-23660988)
chr3 (1-131)||(23665516-23665647)
chr3 (1-143)||(20520528-20520670)
chr3 (1-131)||(757758-757888)
chr3 (2-131)||(55326350-55326478)
chr3 (2-131)||(27709504-27709632)
chr3 (1-91)||(24037805-24037895)
chr3 (1-91)||(2207233-2207323)
chr3 (1-143)||(12965269-12965411)
chr3 (1-91)||(29350812-29350902)
chr3 (1-86)||(3656668-3656753)
chr3 (66-131)||(55431865-55431930)
chr3 (41-86)||(11399972-11400018)
chr3 (41-91)||(35456396-35456446)
chr3 (99-131)||(32473418-32473450)
chr3 (108-143)||(12111990-12112025)
[»] chr4 (28 HSPs)
chr4 (1-131)||(31269596-31269726)
chr4 (1-131)||(37259258-37259388)
chr4 (1-131)||(31274085-31274215)
chr4 (1-131)||(37263958-37264088)
chr4 (1-131)||(16421613-16421743)
chr4 (1-143)||(19540561-19540703)
chr4 (1-131)||(32220961-32221091)
chr4 (1-131)||(51698493-51698623)
chr4 (1-131)||(55252237-55252367)
chr4 (1-131)||(33468396-33468527)
chr4 (1-143)||(13060032-13060175)
chr4 (1-86)||(8029781-8029866)
chr4 (1-86)||(19102552-19102637)
chr4 (1-91)||(33462798-33462888)
chr4 (1-85)||(48276098-48276181)
chr4 (2-133)||(19906812-19906944)
chr4 (1-91)||(19107182-19107272)
chr4 (1-131)||(12823282-12823412)
chr4 (1-84)||(42758297-42758380)
chr4 (1-86)||(47244714-47244799)
chr4 (41-138)||(13065191-13065289)
chr4 (41-133)||(6943390-6943483)
chr4 (99-143)||(8694382-8694426)
chr4 (41-75)||(26188139-26188173)
chr4 (99-140)||(23093774-23093815)
chr4 (99-131)||(5270818-5270850)
chr4 (43-91)||(15805076-15805124)
chr4 (99-131)||(31728760-31728792)
[»] chr1 (20 HSPs)
chr1 (1-143)||(38621279-38621421)
chr1 (3-131)||(47450618-47450746)
chr1 (1-143)||(16834046-16834188)
chr1 (1-131)||(19798394-19798524)
chr1 (1-143)||(33300625-33300767)
chr1 (1-131)||(25844326-25844457)
chr1 (1-131)||(39200156-39200285)
chr1 (1-131)||(16649029-16649158)
chr1 (1-86)||(23192265-23192350)
chr1 (1-91)||(7882557-7882648)
chr1 (1-81)||(39587802-39587882)
chr1 (1-84)||(40166535-40166618)
chr1 (41-143)||(20107961-20108064)
chr1 (41-86)||(16036230-16036276)
chr1 (43-75)||(8138240-8138272)
chr1 (99-143)||(8138287-8138331)
chr1 (99-131)||(10135994-10136026)
chr1 (102-130)||(11806933-11806961)
chr1 (99-131)||(26927115-26927147)
chr1 (40-75)||(12260601-12260636)
[»] scaffold0002 (2 HSPs)
scaffold0002 (1-131)||(4635-4765)
scaffold0002 (1-131)||(443337-443467)
[»] chr7 (17 HSPs)
chr7 (1-131)||(4930793-4930923)
chr7 (1-143)||(27238722-27238864)
chr7 (1-131)||(42625982-42626112)
chr7 (1-143)||(8268867-8269009)
chr7 (1-131)||(12799958-12800088)
chr7 (3-123)||(2595398-2595518)
chr7 (1-91)||(30258674-30258764)
chr7 (52-138)||(3880586-3880672)
chr7 (41-133)||(10392487-10392580)
chr7 (41-138)||(10387744-10387842)
chr7 (1-86)||(13313726-13313807)
chr7 (41-143)||(21671804-21671907)
chr7 (9-86)||(4580081-4580158)
chr7 (41-91)||(26286578-26286629)
chr7 (41-119)||(3285110-3285189)
chr7 (1-56)||(44422606-44422661)
chr7 (39-91)||(23319525-23319577)
[»] chr6 (22 HSPs)
chr6 (1-131)||(16835552-16835682)
chr6 (1-131)||(6407255-6407385)
chr6 (1-131)||(33687042-33687171)
chr6 (1-133)||(14509544-14509676)
chr6 (1-132)||(20747695-20747825)
chr6 (1-138)||(11428531-11428669)
chr6 (1-143)||(2699475-2699617)
chr6 (1-131)||(11559610-11559740)
chr6 (1-131)||(11534100-11534230)
chr6 (1-131)||(11570138-11570268)
chr6 (1-131)||(25313847-25313977)
chr6 (1-131)||(26201341-26201471)
chr6 (1-131)||(4156745-4156875)
chr6 (1-86)||(12689545-12689630)
chr6 (41-143)||(19994779-19994882)
chr6 (36-91)||(19674393-19674448)
chr6 (43-133)||(17599980-17600071)
chr6 (52-138)||(5856602-5856689)
chr6 (46-132)||(12405754-12405841)
chr6 (53-143)||(22694747-22694838)
chr6 (99-131)||(8748429-8748461)
chr6 (99-138)||(17914255-17914294)
[»] chr2 (17 HSPs)
chr2 (1-131)||(1934386-1934517)
chr2 (1-131)||(9180121-9180250)
chr2 (1-131)||(9184812-9184941)
chr2 (1-131)||(25477688-25477818)
chr2 (1-131)||(30651489-30651615)
chr2 (1-143)||(12797498-12797638)
chr2 (1-91)||(31327324-31327414)
chr2 (1-129)||(29678329-29678457)
chr2 (4-79)||(7737307-7737382)
chr2 (1-61)||(25496786-25496846)
chr2 (40-91)||(17453048-17453099)
chr2 (2-57)||(19094012-19094067)
chr2 (99-131)||(12360917-12360949)
chr2 (99-131)||(17968357-17968389)
chr2 (99-131)||(19891874-19891906)
chr2 (103-130)||(34495494-34495521)
chr2 (1-32)||(42926135-42926166)
[»] chr5 (18 HSPs)
chr5 (1-131)||(37248196-37248324)
chr5 (1-131)||(20180549-20180679)
chr5 (1-143)||(12103599-12103739)
chr5 (1-131)||(39518970-39519096)
chr5 (2-137)||(40148470-40148603)
chr5 (1-86)||(4872473-4872557)
chr5 (1-131)||(39523609-39523735)
chr5 (1-91)||(9726187-9726277)
chr5 (1-91)||(35679322-35679411)
chr5 (60-131)||(6512031-6512102)
chr5 (1-63)||(6513375-6513437)
chr5 (41-133)||(16115625-16115717)
chr5 (41-86)||(15149294-15149339)
chr5 (99-131)||(26667947-26667979)
chr5 (99-131)||(26939544-26939576)
chr5 (99-131)||(36424307-36424339)
chr5 (104-131)||(37537333-37537360)
chr5 (104-131)||(37646452-37646479)
[»] scaffold0054 (2 HSPs)
scaffold0054 (1-143)||(29747-29888)
scaffold0054 (1-91)||(26027-26117)
[»] scaffold0352 (1 HSPs)
scaffold0352 (1-131)||(7678-7809)
[»] scaffold0011 (1 HSPs)
scaffold0011 (2-91)||(145856-145945)
[»] scaffold0690 (1 HSPs)
scaffold0690 (41-143)||(5839-5942)


Alignment Details
Target: chr8 (Bit Score: 102; Significance: 5e-51; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 5e-51
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 38181766 - 38181624
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaa 100  Q
    |||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||    
T  38181766 gagatgaagagaagaaagactcgtcaacacaagtcaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttggtgtgttttttaaa 38181667  T
Q  101 ctgagtggagtcctctatttatatagagattttataaccgttt 143  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  38181666 ctgagtggagtcctctatttatatagagattttgtaaccgttt 38181624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 7e-44
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 40125419 - 40125289
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaa 100  Q
    ||||||||||||||||||||| |||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||    
T  40125419 gagatgaagagaagaaagacttgtcaacacaagtcaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttggtgtgttttttgaa 40125320  T
Q  101 ctgagtggagtcctctatttatatagagatt 131  Q
    |||||||||||||||||||||||||||||||    
T  40125319 ctgagtggagtcctctatttatatagagatt 40125289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 2e-41
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 18875912 - 18875782
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaa 100  Q
    ||||||||||||||||||| |||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||       ||    
T  18875912 gagatgaagagaagaaagattcgtcaacacaagttaagaaagagagaagagagaaagagttcccgacaactcaatgaaactctatggtgtgtttattgaa 18875813  T
Q  101 ctgagtggagtcctctatttatatagagatt 131  Q
    |||||||||||||||||||||||||||||||    
T  18875812 ctgagtggagtcctctatttatatagagatt 18875782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 86; E-Value: 2e-41
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 19167219 - 19167361
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaa 100  Q
    |||||||||||||||||||||||||| ||||| | ||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||       ||    
T  19167219 gagatgaagagaagaaagactcgtcaacacaagtcaagaaagggagaagagataaagagttcccaacaactcaatgaaactctttggtgtgttttttgaa 19167318  T
Q  101 ctgagtggagtcctctatttatatagagattttataaccgttt 143  Q
    |||||||||||| |||||||||||||||||||| |||| ||||    
T  19167319 ctgagtggagtcttctatttatatagagattttgtaactgttt 19167361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 85; E-Value: 7e-41
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 33417102 - 33417243
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaa 100  Q
    |||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||       ||    
T  33417102 gagatgaagagaagaaagactcgtcaacacaagtcaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttagtgtg-tttatgaa 33417200  T
Q  101 ctgagtggagtcctctatttatatagagattttataaccgttt 143  Q
    || |||||||||||||||||||||||||||||| |||| ||||    
T  33417201 ctaagtggagtcctctatttatatagagattttgtaactgttt 33417243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 78; E-Value: 1e-36
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 17020923 - 17021065
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaa 100  Q
    ||||||||||||||||||| |||||| ||||| | || ||||||||||||||||||||||| ||||||||| |||||||||||||| ||||       ||    
T  17020923 gagatgaagagaagaaagaatcgtcaacacaagtcaaaaaagggagaagagagaaagagtttccgacaacttaatgaaactctttggtgtgtttcttgaa 17021022  T
Q  101 ctgagtggagtcctctatttatatagagattttataaccgttt 143  Q
    ||||||||||||||||||||||| ||||||||| |||| ||||    
T  17021023 ctgagtggagtcctctatttatacagagattttgtaactgttt 17021065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 78; E-Value: 1e-36
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 17551360 - 17551502
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaa 100  Q
    ||||||||||||||||||| |||||| ||||| | || ||||||||||||||||||||||| ||||||||| |||||||||||||| ||||       ||    
T  17551360 gagatgaagagaagaaagaatcgtcaacacaagtcaaaaaagggagaagagagaaagagtttccgacaacttaatgaaactctttggtgtgtttcttgaa 17551459  T
Q  101 ctgagtggagtcctctatttatatagagattttataaccgttt 143  Q
    ||||||||||||||||||||||| ||||||||| |||| ||||    
T  17551460 ctgagtggagtcctctatttatacagagattttgtaactgttt 17551502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 75; E-Value: 6e-35
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 1910478 - 1910347
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtg-nnnnnnna 99  Q
    |||||||||||||||||||||||||| ||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||        |    
T  1910478 gagatgaagagaagaaagactcgtcaacacaagtcaagaaaggaagaagagagaaagagttcccgacaactcaatgaaactctttggtgtgtttttttta 1910379  T
Q  100 actgagtggagtcctctatttatatagagatt 131  Q
    |||||| ||||| |||||||||||||||||||    
T  1910378 actgagcggagtactctatttatatagagatt 1910347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 70; E-Value: 6e-32
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 1808018 - 1808160
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaa 100  Q
    |||||||| ||||||||||||||||| ||||| | |||||| |||||||||| ||||||||||| |||||||||||||||| |||| ||||       ||    
T  1808018 gagatgaatagaagaaagactcgtcaacacaagtcaagaaatggagaagagataaagagttcccaacaactcaatgaaactttttggtgtgttttttgaa 1808117  T
Q  101 ctgagtggagtcctctatttatatagagattttataaccgttt 143  Q
    ||||||| |||| |||||||||||||||||||| |||| ||||    
T  1808118 ctgagtgtagtcttctatttatatagagattttgtaactgttt 1808160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 70; E-Value: 6e-32
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 44925445 - 44925356
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgt 90  Q
    ||||||||||||| |||||||||||| ||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  44925445 gagatgaagagaataaagactcgtcaacacaagtcaagaaagggagaagagagaaagagtttccgacaactcaatgaaactctttgttgt 44925356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 65; E-Value: 6e-29
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 15951076 - 15950947
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaa 100  Q
    |||| ||||| ||||||| ||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||       ||    
T  15951076 gagaagaagaaaagaaaggctcgtcaacacaagtcaagaaagggagaagagagaaagagttcccgacaactcaatgaaattctttggtgtg-tttttgaa 15950978  T
Q  101 ctgagtggagtcctctatttatatagagatt 131  Q
    || ||||||||||||| ||||||||||||||    
T  15950977 ctaagtggagtcctctttttatatagagatt 15950947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 55; E-Value: 6e-23
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 17953497 - 17953407
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtg 91  Q
    ||||||||||||| ||||| |||||| ||||| | ||||||||||||||||||||||||||| ||||||||||||  ||||||||| ||||    
T  17953497 gagatgaagagaataaagattcgtcaacacaagtcaagaaagggagaagagagaaagagttctcgacaactcaatagaactctttggtgtg 17953407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 17026499 - 17026620
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaa 100  Q
    |||||||||||||||||||||||||| ||||| | |||||||| ||||||         ||||||||||||||||||||||||||| ||||       ||    
T  17026499 gagatgaagagaagaaagactcgtcaacacaagtcaagaaaggaagaaga---------ttcccgacaactcaatgaaactctttggtgtgttttttgaa 17026589  T
Q  101 ctgagtggagtcctctatttatatagagatt 131  Q
     ||||||||||||||||||||||||||||||    
T  17026590 ttgagtggagtcctctatttatatagagatt 17026620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 17556991 - 17557112
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaa 100  Q
    |||||||||||||||||||||||||| ||||| | |||||||| ||||||         ||||||||||||||||||||||||||| ||||       ||    
T  17556991 gagatgaagagaagaaagactcgtcaacacaagtcaagaaaggaagaaga---------ttcccgacaactcaatgaaactctttggtgtgttttttgaa 17557081  T
Q  101 ctgagtggagtcctctatttatatagagatt 131  Q
     ||||||||||||||||||||||||||||||    
T  17557082 ttgagtggagtcctctatttatatagagatt 17557112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 36684157 - 36684230
Alignment:
Q  2 agatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaat 75  Q
    |||||||||||| |||||||||||| ||||||| || |||||||||| ||||||||||||||||||| ||||||    
T  36684157 agatgaagagaaaaaagactcgtcaacacaaatcaataaagggagaaaagagaaagagttcccgacatctcaat 36684230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 15875215 - 15875132
Alignment:
Q  2 agatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactcttt 85  Q
    ||||||||||||||||||||||||| ||||| | ||||||| ||||||||||||| ||||  ||||||||||||  ||||||||    
T  15875215 agatgaagagaagaaagactcgtcaacacaagtcaagaaagtgagaagagagaaaaagttatcgacaactcaatagaactcttt 15875132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 52 - 138
Target Start/End: Original strand, 18260461 - 18260547
Alignment:
Q  52 agaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaactgagtggagtcctctatttatatagagattttataac 138  Q
    ||||||||||| |||||||||||  ||||| |||| ||||       || |||||||||||||||||||||||||||||||| ||||    
T  18260461 agaaagagttctcgacaactcaacaaaactatttggtgtgatttatgaattgagtggagtcctctatttatatagagattttgtaac 18260547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 7002261 - 7002305
Alignment:
Q  41 agggagaagagagaaagagttcccgacaactcaatgaaactcttt 85  Q
    |||||||| ||||||||||||| ||||||||||||  ||||||||    
T  7002261 agggagaacagagaaagagttctcgacaactcaatagaactcttt 7002305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 44 - 91
Target Start/End: Original strand, 17794090 - 17794137
Alignment:
Q  44 gagaagagagaaagagttcccgacaactcaatgaaactctttgttgtg 91  Q
    ||||||||||||||||||| ||| |||||||| ||| |||||| ||||    
T  17794090 gagaagagagaaagagttctcgataactcaataaaattctttggtgtg 17794137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 1e-48; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 1e-48
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 46964583 - 46964713
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaa 100  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||    
T  46964583 gagatgaagagaagaaagactcgtcaacacaaatcaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttggtgtgatttttgaa 46964682  T
Q  101 ctgagtggagtcctctatttatatagagatt 131  Q
    |||||||||||||||||||||||||||||||    
T  46964683 ctgagtggagtcctctatttatatagagatt 46964713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 7e-44
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 3419560 - 3419690
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaa 100  Q
    |||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||       ||    
T  3419560 gagatgaagagaagaaagactcgtcaacacaagtcaagaaagggagaagagagaaagagttcccgacaactcagtgaaactctttggtgtgttttttgaa 3419659  T
Q  101 ctgagtggagtcctctatttatatagagatt 131  Q
    |||||||||||||||||||||||||||||||    
T  3419660 ctgagtggagtcctctatttatatagagatt 3419690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 4e-42
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 7570740 - 7570609
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtg-nnnnnnna 99  Q
    |||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||        |    
T  7570740 gagatgaagagaagaaagactcgtcaacacaagtcaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttggtgtgtttttttga 7570641  T
Q  100 actgagtggagtcctctatttatatagagatt 131  Q
    ||||||||||||||||||||||||||||||||    
T  7570640 actgagtggagtcctctatttatatagagatt 7570609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 87; E-Value: 4e-42
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 23660988 - 23660857
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtg-nnnnnnna 99  Q
    |||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||        |    
T  23660988 gagatgaagagaagaaagactcgtcaacacaagtcaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttggtgtgtttttttga 23660889  T
Q  100 actgagtggagtcctctatttatatagagatt 131  Q
    ||||||||||||||||||||||||||||||||    
T  23660888 actgagtggagtcctctatttatatagagatt 23660857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 87; E-Value: 4e-42
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 23665647 - 23665516
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtg-nnnnnnna 99  Q
    |||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||        |    
T  23665647 gagatgaagagaagaaagactcgtcaacacaagtcaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttggtgtgtttttttga 23665548  T
Q  100 actgagtggagtcctctatttatatagagatt 131  Q
    ||||||||||||||||||||||||||||||||    
T  23665547 actgagtggagtcctctatttatatagagatt 23665516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 86; E-Value: 2e-41
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 20520528 - 20520670
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaa 100  Q
    |||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||| ||| |||||||||||||||||||| |||        ||    
T  20520528 gagatgaagagaagaaagactcgtcaacacaagtcaagaaagggagaagagagaaagagtttccgccaactcaatgaaactctttggtgtaattttggaa 20520627  T
Q  101 ctgagtggagtcctctatttatatagagattttataaccgttt 143  Q
    |||||||||||||||||||||||| |||||||| |||||||||    
T  20520628 ctgagtggagtcctctatttatatcgagattttgtaaccgttt 20520670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 82; E-Value: 4e-39
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 757888 - 757758
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaa 100  Q
    |||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||       |     
T  757888 gagatgaagagaagaaagactcgtcaacacaagtcaagaaagggagaagagagaaagaattcccgacaactcaatgaaactctttggtgtgttttttgag 757789  T
Q  101 ctgagtggagtcctctatttatatagagatt 131  Q
    ||||||||||| |||||||||||||||||||    
T  757788 ctgagtggagttctctatttatatagagatt 757758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 80; E-Value: 7e-38
Query Start/End: Original strand, 2 - 131
Target Start/End: Original strand, 55326350 - 55326478
Alignment:
Q  2 agatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaac 101  Q
    ||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||       |||    
T  55326350 agatgaagagaagaaagactcgtcaacacaagtcaagaaagggagaagagagaaagagttcccgacaactcaatgaaaatctttggtgtg-tttttgaac 55326448  T
Q  102 tgagtggagtcctctatttatatagagatt 131  Q
    | ||||||||||||||||||||||||||||    
T  55326449 ttagtggagtcctctatttatatagagatt 55326478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 77; E-Value: 4e-36
Query Start/End: Original strand, 2 - 131
Target Start/End: Original strand, 27709504 - 27709632
Alignment:
Q  2 agatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaac 101  Q
    ||||||||||||||||||||||||| ||||| | |||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||       |||    
T  27709504 agatgaagagaagaaagactcgtcaacacaagtcaagaaaaggagaagagagaaagagtttccgacaactcaatgaaactctttggtgtgttctttaaac 27709603  T
Q  102 tgagtggagtcctctatttatatagagatt 131  Q
    |||||||||| |||||||||||||||||||    
T  27709604 tgagtggagt-ctctatttatatagagatt 27709632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 75; E-Value: 6e-35
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 24037895 - 24037805
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtg 91  Q
    |||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24037895 gagatgaagagaagaaagactcgtcaacacaagtcaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttggtgtg 24037805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 2207323 - 2207233
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtg 91  Q
    |||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  2207323 gagatgaagagaagaaagactcgtcaacacaagtcaagaaagggagaagagagaaagagtttccgacaactcaatgaaactctttggtgtg 2207233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 70; E-Value: 6e-32
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 12965411 - 12965269
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaa 100  Q
    ||||||||||||||||||| | |||| ||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||  |||        ||    
T  12965411 gagatgaagagaagaaagaattgtcaacacaagtcaagaaagggagaagagagaaagagttcccgacaactcaataaaactcttttgtgtaatttttgaa 12965312  T
Q  101 ctgagtggagtcctctatttatatagagattttataaccgttt 143  Q
    |||||||||||| | |||||||||||||||||| |||| ||||    
T  12965311 ctgagtggagtcttttatttatatagagattttgtaactgttt 12965269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 67; E-Value: 4e-30
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 29350812 - 29350902
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtg 91  Q
    |||||||||||||||||||||||||| ||||| | || ||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  29350812 gagatgaagagaagaaagactcgtcaacacaagtcaataaaggaagaagagagaaagagttcccgacaactcaatgaaactctttggtgtg 29350902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 3656753 - 3656668
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttg 86  Q
    |||||||||||||||||||| | ||| ||||| |  ||||||||||||||||||||||||| |||| |||| ||||||||||||||    
T  3656753 gagatgaagagaagaaagacccatcaacacaagtccagaaagggagaagagagaaagagtttccgataactgaatgaaactctttg 3656668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 66 - 131
Target Start/End: Original strand, 55431865 - 55431930
Alignment:
Q  66 acaactcaatgaaactctttgttgtgnnnnnnnaactgagtggagtcctctatttatatagagatt 131  Q
    ||||||||||||||||||||| |||        || ||||||||||||||||||||||||||||||    
T  55431865 acaactcaatgaaactctttggtgtattttttaaattgagtggagtcctctatttatatagagatt 55431930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 86
Target Start/End: Original strand, 11399972 - 11400018
Alignment:
Q  41 agggagaagagagaaagagttcccgacaactcaat-gaaactctttg 86  Q
    |||||||||||||||||||||| ||||||||| || |||||||||||    
T  11399972 agggagaagagagaaagagttctcgacaactcgatagaaactctttg 11400018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 91
Target Start/End: Complemental strand, 35456446 - 35456396
Alignment:
Q  41 agggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtg 91  Q
    |||||||||||||||||||||  |||||||||||| ||||| |||| ||||    
T  35456446 agggagaagagagaaagagttatcgacaactcaataaaactatttggtgtg 35456396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 131
Target Start/End: Complemental strand, 32473450 - 32473418
Alignment:
Q  99 aactgagtggagtcctctatttatatagagatt 131  Q
    |||| ||||||||||||||||||||||||||||    
T  32473450 aacttagtggagtcctctatttatatagagatt 32473418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 108 - 143
Target Start/End: Complemental strand, 12112025 - 12111990
Alignment:
Q  108 gagtcctctatttatatagagattttataaccgttt 143  Q
    |||||||||||||||||||||||||| |||| ||||    
T  12112025 gagtcctctatttatatagagattttgtaactgttt 12111990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 3e-46; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 3e-46
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 31269596 - 31269726
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaa 100  Q
    |||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||    
T  31269596 gagatgaagagaagaaagactcgtcaacacaagtcaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttggtgtgttttttgaa 31269695  T
Q  101 ctgagtggagtcctctatttatatagagatt 131  Q
    |||||||||||||||||||||||||||||||    
T  31269696 ctgagtggagtcctctatttatatagagatt 31269726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 94; E-Value: 3e-46
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 37259388 - 37259258
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaa 100  Q
    |||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||    
T  37259388 gagatgaagagaagaaagactcgtcaacacaagtcaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttggtgtgttttttgaa 37259289  T
Q  101 ctgagtggagtcctctatttatatagagatt 131  Q
    |||||||||||||||||||||||||||||||    
T  37259288 ctgagtggagtcctctatttatatagagatt 37259258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 90; E-Value: 7e-44
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 31274085 - 31274215
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaa 100  Q
    |||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||       ||    
T  31274085 gagatgaagagaagaaagactcgtcaacacaagtcaagaaagggagaagagagaaagagtttccgacaactcaatgaaactctttggtgtgttttttgaa 31274184  T
Q  101 ctgagtggagtcctctatttatatagagatt 131  Q
    |||||||||||||||||||||||||||||||    
T  31274185 ctgagtggagtcctctatttatatagagatt 31274215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 90; E-Value: 7e-44
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 37264088 - 37263958
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaa 100  Q
    |||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||       ||    
T  37264088 gagatgaagagaagaaagactcgtcaacacaagtcaagaaagggagaagagagaaagagttcccgacaattcaatgaaactctttggtgtgttttttgaa 37263989  T
Q  101 ctgagtggagtcctctatttatatagagatt 131  Q
    |||||||||||||||||||||||||||||||    
T  37263988 ctgagtggagtcctctatttatatagagatt 37263958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 86; E-Value: 2e-41
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 16421613 - 16421743
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaa 100  Q
    |||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||       ||    
T  16421613 gagatgaagagaagaaagactcgtcaacacaagtcaagaaagggagaagagagaaagagtttccgacaactcaatgaaactctttggtgtgttttttgaa 16421712  T
Q  101 ctgagtggagtcctctatttatatagagatt 131  Q
    |||| ||||||||||||||||||||||||||    
T  16421713 ctgattggagtcctctatttatatagagatt 16421743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 82; E-Value: 4e-39
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 19540703 - 19540561
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaa 100  Q
    ||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||  | |        ||    
T  19540703 gagattaagagaagaaagactcgtcaacacaaatcaagaaagggagaagagagaaagagttgccgacaactcaatgaaactctttagtttattttttgaa 19540604  T
Q  101 ctgagtggagtcctctatttatatagagattttataaccgttt 143  Q
    ||||||||||||||||||||||||||||||||| |||| ||||    
T  19540603 ctgagtggagtcctctatttatatagagattttgtaactgttt 19540561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 82; E-Value: 4e-39
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 32221091 - 32220961
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaa 100  Q
    |||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||| ||||||||||||||||||| |||| |||        ||    
T  32221091 gagatgaagagaagaaagactcgtcaacacaagtcaagaaagggagaagagagaaagagtttccgacaactcaatgaaactttttggtgtattttttgaa 32220992  T
Q  101 ctgagtggagtcctctatttatatagagatt 131  Q
    |||||||||||||||||||||||||||||||    
T  32220991 ctgagtggagtcctctatttatatagagatt 32220961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 82; E-Value: 4e-39
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 51698493 - 51698623
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaa 100  Q
    |||||||||||||||||||||||||| ||||| | ||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||       ||    
T  51698493 gagatgaagagaagaaagactcgtcaacacaagtcaagaaagggagaagatagaaagagttcctgacaactcaatgaaactctttggtgtgttttatgaa 51698592  T
Q  101 ctgagtggagtcctctatttatatagagatt 131  Q
    |||||||||||| ||||||||||||||||||    
T  51698593 ctgagtggagtcatctatttatatagagatt 51698623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 82; E-Value: 4e-39
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 55252237 - 55252367
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaa 100  Q
    |||||||||||||||||||||||||| ||||| | |||||||||| ||||||||||||| ||||||||||||||||||| |||||| ||||       ||    
T  55252237 gagatgaagagaagaaagactcgtcaacacaagtcaagaaagggataagagagaaagagctcccgacaactcaatgaaattctttggtgtgttttttgaa 55252336  T
Q  101 ctgagtggagtcctctatttatatagagatt 131  Q
    |||||||||||||||||||||||||||||||    
T  55252337 ctgagtggagtcctctatttatatagagatt 55252367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 33468527 - 33468396
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtg-nnnnnnna 99  Q
    |||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| || |        |    
T  33468527 gagatgaagagaagaaagactcgtcaacacaagtcaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttggtgcgtttttttga 33468428  T
Q  100 actgagtggagtcctctatttatatagagatt 131  Q
    |||||||||||||||||||||||||| |||||    
T  33468427 actgagtggagtcctctatttatataaagatt 33468396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 13060032 - 13060175
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgt-gnnnnnnna 99  Q
    |||| |||||||||||||| |||||| ||||| | |||||||||||||||||||||||||||||||||| | ||||||||||||| |||| |       |    
T  13060032 gagaagaagagaagaaagagtcgtcaacacaagtcaagaaagggagaagagagaaagagttcccgacaattaaatgaaactcttttttgtggttttttga 13060131  T
Q  100 actgagtggagtcctctatttatatagagattttataaccgttt 143  Q
    ||| |||||||||||||||||||||||||||||| |||| ||||    
T  13060132 actcagtggagtcctctatttatatagagattttgtaactgttt 13060175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 70; E-Value: 6e-32
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 8029866 - 8029781
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttg 86  Q
    |||||||||||||||||||| ||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  8029866 gagatgaagagaagaaagacacgtcaacacaaatcaaggaagggagaagagagaaagagttcccgacaactcaatgaaactctttg 8029781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 70; E-Value: 6e-32
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 19102552 - 19102637
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttg 86  Q
    |||||||||||||||||||||||||| ||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  19102552 gagatgaagagaagaaagactcgtcaacacaagtcaagaaagggagaagagagaaaaagttcccgacaactcaatgaaactctttg 19102637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 67; E-Value: 4e-30
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 33462888 - 33462798
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtg 91  Q
    ||||| |||||||||||||||||||| ||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  33462888 gagataaagagaagaaagactcgtcaacacaagtcaagaaagggagaagagagaaagagttctcgacaactcaatgaaactctttggtgtg 33462798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 65; E-Value: 6e-29
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 48276181 - 48276098
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactcttt 85  Q
    |||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  48276181 gagatgaagagaagaaagactcgtcaacacaagtcaagaaagggagaagagagaaaga-ttcccgacaactcaatgaaactcttt 48276098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 2 - 133
Target Start/End: Original strand, 19906812 - 19906944
Alignment:
Q  2 agatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgt-gnnnnnnnaa 100  Q
    |||| |||||||||||||||||||| ||||| | |||||||| |||||||||||||||||||| |||||||||| |||||||||| | |         ||    
T  19906812 agataaagagaagaaagactcgtcaacacaagtcaagaaaggaagaagagagaaagagttcccaacaactcaattaaactctttgatatatttttttaaa 19906911  T
Q  101 ctgagtggagtcctctatttatatagagatttt 133  Q
    |||||||||||||||||||||||||||||||||    
T  19906912 ctgagtggagtcctctatttatatagagatttt 19906944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 63; E-Value: 9e-28
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 19107182 - 19107272
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtg 91  Q
    ||||| |||||||||||||||||||| ||||| | ||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||    
T  19107182 gagataaagagaagaaagactcgtcaacacaagtcaagaaagagagaagagagaaagagtttccgacaactcaatgaaactctttggtgtg 19107272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 62; E-Value: 4e-27
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 12823412 - 12823282
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaa 100  Q
    |||||| ||||||||||||||||||| ||||| | |||||||| ||||||||||||||||| ||||||||||||||||| |||||| ||||       ||    
T  12823412 gagatggagagaagaaagactcgtcaacacaagtcaagaaaggaagaagagagaaagagttaccgacaactcaatgaaattctttggtgtgttttttgaa 12823313  T
Q  101 ctgagtggagtcctctatttatatagagatt 131  Q
    ||||||| |||  |||||| |||||||||||    
T  12823312 ctgagtgaagttttctattgatatagagatt 12823282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 42758380 - 42758297
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctt 84  Q
    ||||||||||||||||| |||||||| ||||| | ||||||||||| ||||||||||||||| |||||||||||| ||||||||    
T  42758380 gagatgaagagaagaaaaactcgtcaacacaagtcaagaaagggagcagagagaaagagttctcgacaactcaataaaactctt 42758297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 47244714 - 47244799
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttg 86  Q
    ||||||||| | |||| ||||||||| ||||| | || ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  47244714 gagatgaagtggagaatgactcgtcaacacaagtcaataaagggagaagagagaaagagttcccgacaactaaatgaaactctttg 47244799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 41 - 138
Target Start/End: Complemental strand, 13065289 - 13065191
Alignment:
Q  41 agggagaagagagaaagagttcccgacaactcaat-gaaactctttgttgtgnnnnnnnaactgagtggagtcctctatttatatagagattttataac 138  Q
    |||||||||||| ||||| ||  |||||||||||| ||||||||||| ||||       |||| ||||||||||| |||||||||||||||||| ||||    
T  13065289 agggagaagagataaagatttttcgacaactcaatagaaactctttggtgtgttttttgaactaagtggagtcctgtatttatatagagattttgtaac 13065191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 41 - 133
Target Start/End: Original strand, 6943390 - 6943483
Alignment:
Q  41 agggagaagagagaaagagttcccgacaactcaat-gaaactctttgttgtgnnnnnnnaactgagtggagtcctctatttatatagagatttt 133  Q
    ||||||||||| |||||||||| |||||||||||| ||||||||||| ||||       |||||||| ||||||| | ||||||| ||||||||    
T  6943390 agggagaagagcgaaagagttctcgacaactcaatagaaactctttgatgtgatttttgaactgagtagagtcctatgtttatattgagatttt 6943483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 99 - 143
Target Start/End: Original strand, 8694382 - 8694426
Alignment:
Q  99 aactgagtggagtcctctatttatatagagattttataaccgttt 143  Q
    |||| |||||||||||||||||||||||||||||| |||| ||||    
T  8694382 aactaagtggagtcctctatttatatagagattttgtaactgttt 8694426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 75
Target Start/End: Complemental strand, 26188173 - 26188139
Alignment:
Q  41 agggagaagagagaaagagttcccgacaactcaat 75  Q
    |||||||||||||||||||||| ||||||||||||    
T  26188173 agggagaagagagaaagagttctcgacaactcaat 26188139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 99 - 140
Target Start/End: Original strand, 23093774 - 23093815
Alignment:
Q  99 aactgagtggagtcctctatttatatagagattttataaccg 140  Q
    |||||||||||||||||||||||| ||||| |||| ||||||    
T  23093774 aactgagtggagtcctctatttatttagaggttttgtaaccg 23093815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 131
Target Start/End: Complemental strand, 5270850 - 5270818
Alignment:
Q  99 aactgagtggagtcctctatttatatagagatt 131  Q
    |||| ||||||||||||||||||||||||||||    
T  5270850 aactaagtggagtcctctatttatatagagatt 5270818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 15805124 - 15805076
Alignment:
Q  43 ggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtg 91  Q
    |||||||||||||||||||| |||||||||||   |||| |||||||||    
T  15805124 ggagaagagagaaagagttctcgacaactcaagagaactgtttgttgtg 15805076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 131
Target Start/End: Complemental strand, 31728792 - 31728760
Alignment:
Q  99 aactgagtggagtcctctatttatatagagatt 131  Q
    |||| ||||||||||||||||||||||||||||    
T  31728792 aactaagtggagtcctctatttatatagagatt 31728760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 3e-46; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 3e-46
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 38621279 - 38621421
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaa 100  Q
    ||||||||||||||||| |||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||    
T  38621279 gagatgaagagaagaaaaactcgtcaacacaagtcaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttggtgtgttttttgaa 38621378  T
Q  101 ctgagtggagtcctctatttatatagagattttataaccgttt 143  Q
    ||||||||||||||||||||||||||||||||| |||| ||||    
T  38621379 ctgagtggagtcctctatttatatagagattttgtaactgttt 38621421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 1e-42
Query Start/End: Original strand, 3 - 131
Target Start/End: Complemental strand, 47450746 - 47450618
Alignment:
Q  3 gatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaact 102  Q
    |||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||       ||||    
T  47450746 gatgaagagaagaaagactcgtcaacacaagtcaagaaagggagaagagagaaagagttcccgataactcaatgaaactctttgatgtgttttttaaact 47450647  T
Q  103 gagtggagtcctctatttatatagagatt 131  Q
    |||||||||||||||||||||||||||||    
T  47450646 gagtggagtcctctatttatatagagatt 47450618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 2e-41
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 16834046 - 16834188
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaa 100  Q
    |||||||||||||||||||||| ||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||        ||    
T  16834046 gagatgaagagaagaaagactcatcaacacaagtcaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttggtgtattgtttgaa 16834145  T
Q  101 ctgagtggagtcctctatttatatagagattttataaccgttt 143  Q
    || |||||||||||||||||||||||||||||| |||| ||||    
T  16834146 ctaagtggagtcctctatttatatagagattttgtaactgttt 16834188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 86; E-Value: 2e-41
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 19798524 - 19798394
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaa 100  Q
    |||||||||||||||||||||||||| ||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| |||        ||    
T  19798524 gagatgaagagaagaaagactcgtcaacacaagtcaagaaaaggagaagagagaaagagttcccgacaactcaatgaaactctttggtgtattttttgaa 19798425  T
Q  101 ctgagtggagtcctctatttatatagagatt 131  Q
    |||||||||||||||||||||||||||||||    
T  19798424 ctgagtggagtcctctatttatatagagatt 19798394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 86; E-Value: 2e-41
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 33300767 - 33300625
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaa 100  Q
    |||||||||| |||||||||| |||| ||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||       ||    
T  33300767 gagatgaagaaaagaaagacttgtcaacacaagtcaagaaagggagaagagagaaagagttcccgacaattcaatgaaactctttggtgtgttttttgaa 33300668  T
Q  101 ctgagtggagtcctctatttatatagagattttataaccgttt 143  Q
    ||||||||||||||||||||||||||||||||| |||| ||||    
T  33300667 ctgagtggagtcctctatttatatagagattttgtaactgttt 33300625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 25844326 - 25844457
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtg-nnnnnnna 99  Q
    |||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||        |    
T  25844326 gagatgaagagaagaaagactcgtcaacacaagtcaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttggtgtgtttttttga 25844425  T
Q  100 actgagtggagtcctctatttatatagagatt 131  Q
    || |||||||||||||||||||||||||||||    
T  25844426 accgagtggagtcctctatttatatagagatt 25844457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 77; E-Value: 4e-36
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 39200285 - 39200156
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaa 100  Q
    |||||||||||||||||||||||||| ||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||       ||    
T  39200285 gagatgaagagaagaaagactcgtcaacacaagtcaagaaagggagaagagagaaagggttcccgacaactcaatgaaactctttggtgtg-tttttaaa 39200187  T
Q  101 ctgagtggagtcctctatttatatagagatt 131  Q
    |  ||||||||||||||||||||||||||||    
T  39200186 ccaagtggagtcctctatttatatagagatt 39200156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 74; E-Value: 3e-34
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 16649158 - 16649029
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaa 100  Q
    |||||||| ||||||||||||||||| ||||| | ||||| ||||||||||||||| |||||||||||||||||||||||| |||| ||||       ||    
T  16649158 gagatgaatagaagaaagactcgtcaacacaagtcaagaa-gggagaagagagaaaaagttcccgacaactcaatgaaactttttggtgtgttttttgaa 16649060  T
Q  101 ctgagtggagtcctctatttatatagagatt 131  Q
    |||||||||||||||||||||||||||||||    
T  16649059 ctgagtggagtcctctatttatatagagatt 16649029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 70; E-Value: 6e-32
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 23192350 - 23192265
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttg 86  Q
    |||||||||||||||||||| ||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23192350 gagatgaagagaagaaagacccgtcaacacaagtcaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttg 23192265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 7882557 - 7882648
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaat-gaaactctttgttgtg 91  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||    
T  7882557 gagatgaagagaagaaagactcgtcaacacaagttaagaaagggagaagagagaaagagttctcgacaactcaatagaaactctttgatgtg 7882648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 57; E-Value: 4e-24
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 39587882 - 39587802
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaact 81  Q
    |||||||||||||||||||||||||| ||||| ||||| || |||||||||||||| |||||| |||||||||||||||||    
T  39587882 gagatgaagagaagaaagactcgtcaacacaagttaaggaatggagaagagagaaatagttcctgacaactcaatgaaact 39587802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 40166535 - 40166618
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctt 84  Q
    |||||| |||||| |||||||||||| ||| | | |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  40166535 gagatggagagaataaagactcgtcaacacgagtcaagaaaaggagaagagagaaagagttcccgacaactcaatgaaactctt 40166618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 41 - 143
Target Start/End: Original strand, 20107961 - 20108064
Alignment:
Q  41 agggagaagagagaaagagttcccgacaactcaat-gaaactctttgttgtgnnnnnnnaactgagtggagtcctctatttatatagagattttataacc 139  Q
    |||||||||||||||||||||| |||||||||||| ||| ||||||| |||        |||||||| ||||||| |||||||||||||||||| ||||     
T  20107961 agggagaagagagaaagagttctcgacaactcaatagaatctctttggtgtaattttagaactgagtagagtcctatatttatatagagattttttaact 20108060  T
Q  140 gttt 143  Q
    ||||    
T  20108061 gttt 20108064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 86
Target Start/End: Original strand, 16036230 - 16036276
Alignment:
Q  41 agggagaagagagaaagagttcccgacaactcaat-gaaactctttg 86  Q
    |||||||||||||||||||||| |||||||| ||| |||||||||||    
T  16036230 agggagaagagagaaagagttctcgacaacttaatagaaactctttg 16036276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 75
Target Start/End: Original strand, 8138240 - 8138272
Alignment:
Q  43 ggagaagagagaaagagttcccgacaactcaat 75  Q
    |||||||||||||||||||| ||||||||||||    
T  8138240 ggagaagagagaaagagttctcgacaactcaat 8138272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 143
Target Start/End: Original strand, 8138287 - 8138331
Alignment:
Q  99 aactgagtggagtcctctatttatatagagattttataaccgttt 143  Q
    ||||||||| ||| ||||||||||||||||||||| |||| ||||    
T  8138287 aactgagtgaagttctctatttatatagagattttgtaactgttt 8138331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 131
Target Start/End: Original strand, 10135994 - 10136026
Alignment:
Q  99 aactgagtggagtcctctatttatatagagatt 131  Q
    |||| ||||||||||||||||||||||||||||    
T  10135994 aactaagtggagtcctctatttatatagagatt 10136026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 130
Target Start/End: Original strand, 11806933 - 11806961
Alignment:
Q  102 tgagtggagtcctctatttatatagagat 130  Q
    |||||||||||||||||||||||||||||    
T  11806933 tgagtggagtcctctatttatatagagat 11806961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 131
Target Start/End: Complemental strand, 26927147 - 26927115
Alignment:
Q  99 aactgagtggagtcctctatttatatagagatt 131  Q
    |||| ||||||||||||||||||||||||||||    
T  26927147 aactaagtggagtcctctatttatatagagatt 26927115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 75
Target Start/End: Original strand, 12260601 - 12260636
Alignment:
Q  40 aagggagaagagagaaagagttcccgacaactcaat 75  Q
    ||||||||||||||||||||||| | ||||||||||    
T  12260601 aagggagaagagagaaagagttctcaacaactcaat 12260636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 90; Significance: 7e-44; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 90; E-Value: 7e-44
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 4635 - 4765
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaa 100  Q
    |||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||    
T  4635 gagatgaagagaagaaagactcgtcaacacaagtcaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttggtgtgttttttgaa 4734  T
Q  101 ctgagtggagtcctctatttatatagagatt 131  Q
    |||||||||||| ||||||||||||||||||    
T  4735 ctgagtggagtcatctatttatatagagatt 4765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 70; E-Value: 6e-32
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 443467 - 443337
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaa 100  Q
    |||||||||| |||||||||| || | ||||| | ||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||       ||    
T  443467 gagatgaagacaagaaagacttgttaacacaagtcaagaaagggagaaaatagaaagagttcccgacaactcaatgaaactctttggtgtgttttttgaa 443368  T
Q  101 ctgagtggagtcctctatttatatagagatt 131  Q
    |||||||||||||||||||| ||||||||||    
T  443367 ctgagtggagtcctctatttgtatagagatt 443337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 7e-44; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 7e-44
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 4930793 - 4930923
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaa 100  Q
    ||||||||||||||||||| |||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||    
T  4930793 gagatgaagagaagaaagattcgtcaacacaagtcaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttggtgtgttttttgaa 4930892  T
Q  101 ctgagtggagtcctctatttatatagagatt 131  Q
    |||||||||||||||||||||||||||||||    
T  4930893 ctgagtggagtcctctatttatatagagatt 4930923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 7e-44
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 27238722 - 27238864
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaa 100  Q
    ||||||| || ||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||    
T  27238722 gagatgaggaaaagaaagactcgtcaacacaagtcaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttggtgtgtttattgaa 27238821  T
Q  101 ctgagtggagtcctctatttatatagagattttataaccgttt 143  Q
    ||||||||||||||||||||||||||||||||| |||| ||||    
T  27238822 ctgagtggagtcctctatttatatagagattttgtaactgttt 27238864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 86; E-Value: 2e-41
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 42626112 - 42625982
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaa 100  Q
    |||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||        ||    
T  42626112 gagatgaagagaagaaagactcgtcaacacaagtcaagaaagggagaagagagaaagagttcccgacaactcaatgaaactcattggtgtaatttttgaa 42626013  T
Q  101 ctgagtggagtcctctatttatatagagatt 131  Q
    |||||||||||||||||||||||||||||||    
T  42626012 ctgagtggagtcctctatttatatagagatt 42625982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 1e-36
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 8268867 - 8269009
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaa 100  Q
    |||||||||||||||||||||||||| ||||| | || |||||||||||||||||||||||| ||||||||||||||||||||||| |||        ||    
T  8268867 gagatgaagagaagaaagactcgtcaacacaagtcaacaaagggagaagagagaaagagttctcgacaactcaatgaaactctttggtgtaatttttgaa 8268966  T
Q  101 ctgagtggagtcctctatttatatagagattttataaccgttt 143  Q
    | |||| ||||||||||||||| ||||||||||||||| ||||    
T  8268967 ccgagtagagtcctctatttatttagagattttataactgttt 8269009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 78; E-Value: 1e-36
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 12799958 - 12800088
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaa 100  Q
    |||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||       ||    
T  12799958 gagatgaagagaagaaagactcgtcaacacaagtcaagaaagggagaagagagaaagagtttccgacaactcaatgaaactctttggtgtgttttttgaa 12800057  T
Q  101 ctgagtggagtcctctatttatatagagatt 131  Q
    || |||| |||||||||||||||||| ||||    
T  12800058 ctaagtgaagtcctctatttatatagtgatt 12800088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 3 - 123
Target Start/End: Original strand, 2595398 - 2595518
Alignment:
Q  3 gatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaact 102  Q
    |||||||| ||||||||||||||| ||||| | || ||||||||||||||||||| |||||||||||||||||||||||||||  ||||       ||||    
T  2595398 gatgaagaaaagaaagactcgtcaacacaagtcaataaagggagaagagagaaagggttcccgacaactcaatgaaactctttcgtgtgttttttgaact 2595497  T
Q  103 gagtggagtcctctatttata 123  Q
    |||||||||||||||||||||    
T  2595498 gagtggagtcctctatttata 2595518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 9e-28
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 30258674 - 30258764
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtg 91  Q
    |||||||||||||||||||||||||| ||||| | ||||||||||||||||| ||||||| || |||||||||||||||||||||| ||||    
T  30258674 gagatgaagagaagaaagactcgtcaacacaagtcaagaaagggagaagagaaaaagagtgcctgacaactcaatgaaactctttggtgtg 30258764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 9e-25
Query Start/End: Original strand, 52 - 138
Target Start/End: Original strand, 3880586 - 3880672
Alignment:
Q  52 agaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaactgagtggagtcctctatttatatagagattttataac 138  Q
    ||||||||||||||||||||||||||||||||||| ||||       ||||||||||||||||||||||||||||||||||| ||||    
T  3880586 agaaagagttcccgacaactcaatgaaactctttggtgtgtttttagaactgagtggagtcctctatttatatagagattttgtaac 3880672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 9e-22
Query Start/End: Original strand, 41 - 133
Target Start/End: Complemental strand, 10392580 - 10392487
Alignment:
Q  41 agggagaagagagaaagagttcccgacaactcaat-gaaactctttgttgtgnnnnnnnaactgagtggagtcctctatttatatagagatttt 133  Q
    ||||||||||||||||||||||  ||||||||||| ||||||||||| ||||       |||||||||||||||||||||||||||||||||||    
T  10392580 agggagaagagagaaagagttctagacaactcaatagaaactctttgatgtgatttttgaactgagtggagtcctctatttatatagagatttt 10392487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 41 - 138
Target Start/End: Complemental strand, 10387842 - 10387744
Alignment:
Q  41 agggagaagagagaaagagttcccgacaactcaat-gaaactctttgttgtgnnnnnnnaactgagtggagtcctctatttatatagagattttataac 138  Q
    |||||||||||||||||||||  |||||||||||| ||||||||||| ||||       |||| |||||||||||||||||||||||||||||| ||||    
T  10387842 agggagaagagagaaagagttatcgacaactcaatagaaactctttgatgtgatttttgaactaagtggagtcctctatttatatagagattttgtaac 10387744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 13313807 - 13313726
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttg 86  Q
    |||||||||||||||||||||||||| ||||| |     ||||||||||||||||||||||||| |||||||||| ||||||||||    
T  13313807 gagatgaagagaagaaagactcgtcaacacaagt----caagggagaagagagaaagagttccctacaactcaataaaactctttg 13313726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 41 - 143
Target Start/End: Original strand, 21671804 - 21671907
Alignment:
Q  41 agggagaagagagaaagagttcccgacaactcaat-gaaactctttgttgtgnnnnnnnaactgagtggagtcctctatttatatagagattttataacc 139  Q
    |||||||||||||||| ||||| |  ||||||||| ||||||||||| | ||       ||||||||||||| ||||||||||||||||||||| ||||     
T  21671804 agggagaagagagaaaaagttctcagcaactcaatagaaactctttggtatgatttttgaactgagtggagtactctatttatatagagattttgtaact 21671903  T
Q  140 gttt 143  Q
    ||||    
T  21671904 gttt 21671907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 4580081 - 4580158
Alignment:
Q  9 gagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttg 86  Q
    |||| |||||| |||||| ||||| | |||||||||||||||||||||||||||  ||||||||| |  |||||||||    
T  4580081 gagaggaaagattcgtcaacacaagtcaagaaagggagaagagagaaagagttcttgacaactcactagaactctttg 4580158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 41 - 91
Target Start/End: Complemental strand, 26286629 - 26286578
Alignment:
Q  41 agggagaagagagaaagagttcccgacaactcaat-gaaactctttgttgtg 91  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||| ||||    
T  26286629 agggagaagagagaaagagttctcgacaactcaatagaaactctttggtgtg 26286578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 41 - 119
Target Start/End: Original strand, 3285110 - 3285189
Alignment:
Q  41 agggagaagagagaaagagttcccgacaactcaat-gaaactctttgttgtgnnnnnnnaactgagtggagtcctctatt 119  Q
    |||||||||||||||||||||| | |||||||||| ||||||||||| | ||       |||||||||||||||||||||    
T  3285110 agggagaagagagaaagagttctccacaactcaatagaaactctttggtatgatttttaaactgagtggagtcctctatt 3285189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 44422661 - 44422606
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaa 56  Q
    |||||||||| ||||||||||||||| ||||| | || || |||||||||||||||    
T  44422661 gagatgaagaaaagaaagactcgtcaacacaagtcaaaaaggggagaagagagaaa 44422606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 23319525 - 23319577
Alignment:
Q  39 aaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtg 91  Q
    ||||||| |||||||||| | ||  ||||||||||||||||||||||| ||||    
T  23319525 aaagggaaaagagagaaataattatcgacaactcaatgaaactctttggtgtg 23319577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 7e-44; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 7e-44
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 16835682 - 16835552
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaa 100  Q
    |||||||||||||||||||||||||| ||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||       ||    
T  16835682 gagatgaagagaagaaagactcgtcaacacaagtcaagagagggagaagagagaaagagttcccgacaactcaatgaaactctttggtgtgttttttgaa 16835583  T
Q  101 ctgagtggagtcctctatttatatagagatt 131  Q
    |||||||||||||||||||||||||||||||    
T  16835582 ctgagtggagtcctctatttatatagagatt 16835552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 86; E-Value: 2e-41
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 6407385 - 6407255
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaa 100  Q
    |||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||       ||    
T  6407385 gagatgaagagaagaaagactcgtcaacacaagtcaagaaagggagaagagagaaagagttcccaacaactcaatgaaactctttgatgtgttttttgaa 6407286  T
Q  101 ctgagtggagtcctctatttatatagagatt 131  Q
     ||||||||||||||||||||||||||||||    
T  6407285 ttgagtggagtcctctatttatatagagatt 6407255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 33687171 - 33687042
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaa 100  Q
    |||||||||| ||||||||||||||| ||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||       ||    
T  33687171 gagatgaagaaaagaaagactcgtcaacacaagtcaagaaagggagaagagaaaaagagttcccgacaactcaatgaaactctttggtgtg-tttttgaa 33687073  T
Q  101 ctgagtggagtcctctatttatatagagatt 131  Q
    |||||||||||||||||||||||||||||||    
T  33687072 ctgagtggagtcctctatttatatagagatt 33687042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 80; E-Value: 7e-38
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 14509544 - 14509676
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaa 100  Q
    ||||||||||||||||||||| |||| || || | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||    
T  14509544 gagatgaagagaagaaagacttgtcaacataagtcaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttggtgtgttttttgaa 14509643  T
Q  101 ctgagtggagtcctctatttatatagagatttt 133  Q
    || |||||||||||||||||||| |||||||||    
T  14509644 cttagtggagtcctctatttataaagagatttt 14509676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 20747825 - 20747695
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaa 100  Q
    ||||||||||||||||| |||||||| | ||| | |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||       ||    
T  20747825 gagatgaagagaagaaaaactcgtcaacgcaagtcaagaaagggagaagagagaaagagtt-ccgacaactcaatgaaactctttggtgtgattttttaa 20747727  T
Q  101 ctgagtggagtcctctatttatatagagattt 132  Q
    ||||||||||||||||||||||||||||||||    
T  20747726 ctgagtggagtcctctatttatatagagattt 20747695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 78; E-Value: 1e-36
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 11428531 - 11428669
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtg-nnnnnnna 99  Q
    ||||||||||||||||| |||||||| || || | |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||        |    
T  11428531 gagatgaagagaagaaatactcgtcaacataagtcaagaaagggagaagagagaaagagttcccgacaactcaatgaaactttttgatgtgtttttttga 11428630  T
Q  100 actgagtggagtcctctatttatatagagattttataac 138  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  11428631 actgagtggagtcctctatttatatagagattttgtaac 11428669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 74; E-Value: 3e-34
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 2699617 - 2699475
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaa 100  Q
    |||||||||||||||||||||||||| ||||| | || |||||||||||||||||||||||||| |||||| ||||||||| |||| ||||       ||    
T  2699617 gagatgaagagaagaaagactcgtcaacacaagtcaaaaaagggagaagagagaaagagttcccaacaactaaatgaaactatttggtgtgttttttgaa 2699518  T
Q  101 ctgagtggagtcctctatttatatagagattttataaccgttt 143  Q
    ||||||| | ||||||||||||||||||||||| |||| ||||    
T  2699517 ctgagtgaattcctctatttatatagagattttgtaactgttt 2699475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 74; E-Value: 3e-34
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 11559740 - 11559610
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaa 100  Q
    ||||||||||||||||||||| | || ||||| | ||||||||||||||||||||||||||||  ||||||||||||||||||||| ||||       ||    
T  11559740 gagatgaagagaagaaagacttgacaacacaagtcaagaaagggagaagagagaaagagttccacacaactcaatgaaactctttggtgtgttttttgaa 11559641  T
Q  101 ctgagtggagtcctctatttatatagagatt 131  Q
    ||||||||||||||||||||||| |||||||    
T  11559640 ctgagtggagtcctctatttataaagagatt 11559610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 70; E-Value: 6e-32
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 11534230 - 11534100
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaa 100  Q
    ||||||||||||||||||||| | || ||||| | |||||||||||||||||||||||||| || ||||||||||||||||||||| ||||       ||    
T  11534230 gagatgaagagaagaaagacttgacaacacaagtcaagaaagggagaagagagaaagagtttcccacaactcaatgaaactctttggtgtgttttttgaa 11534131  T
Q  101 ctgagtggagtcctctatttatatagagatt 131  Q
    ||||||| ||||||||||||||| |||||||    
T  11534130 ctgagtgaagtcctctatttataaagagatt 11534100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 11570268 - 11570138
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaa 100  Q
    ||||||||||||||||||||| | || ||||| | ||||||| ||||||||||||||||||||  | ||||||||||||||||||| ||||       ||    
T  11570268 gagatgaagagaagaaagacttgacaacacaagtcaagaaagtgagaagagagaaagagttccgtagaactcaatgaaactctttggtgtgttttttgaa 11570169  T
Q  101 ctgagtggagtcctctatttatatagagatt 131  Q
    ||||||||||||||||||||||| |||||||    
T  11570168 ctgagtggagtcctctatttataaagagatt 11570138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 25313977 - 25313847
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaa 100  Q
    |||||||||| ||||||||||||||| ||||| | |||||||||| |||| ||||||||||||||||||||||||||||||||||| |||        ||    
T  25313977 gagatgaagaaaagaaagactcgtcaacacaagtcaagaaagggataagatagaaagagttcccgacaactcaatgaaactctttggtgtattttttgaa 25313878  T
Q  101 ctgagtggagtcctctatttatatagagatt 131  Q
    || ||| ||||| ||||||||||||||||||    
T  25313877 ctaagttgagtcatctatttatatagagatt 25313847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 26201471 - 26201341
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaa 100  Q
    |||||||||| ||||||||||||||| ||||| | |||||||||| |||| ||||||||||||||||||||||||||||||||||| |||        ||    
T  26201471 gagatgaagaaaagaaagactcgtcaacacaagtcaagaaagggataagatagaaagagttcccgacaactcaatgaaactctttggtgtattttttgaa 26201372  T
Q  101 ctgagtggagtcctctatttatatagagatt 131  Q
    || ||| ||||| ||||||||||||||||||    
T  26201371 ctaagttgagtcatctatttatatagagatt 26201341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 58; E-Value: 9e-25
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 4156875 - 4156745
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaa 100  Q
    ||||| |||| ||||||||||||| | ||||| |  |||||| |||||||||||||||||||||||||||||||||||||| |||| |||        ||    
T  4156875 gagataaagaaaagaaagactcgttaacacaagtctagaaagagagaagagagaaagagttcccgacaactcaatgaaactttttggtgtaatttttgaa 4156776  T
Q  101 ctgagtggagtcctctatttatatagagatt 131  Q
    |||||||||||||| |||||||||| |||||    
T  4156775 ctgagtggagtcctttatttatatatagatt 4156745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 12689545 - 12689630
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttg 86  Q
    ||||||||||||||||||| | |||| ||||| | || |||| |||||||||||||||||| ||||||||||||||||||||||||    
T  12689545 gagatgaagagaagaaagaattgtcaacacaagtcaataaagagagaagagagaaagagtttccgacaactcaatgaaactctttg 12689630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 41 - 143
Target Start/End: Complemental strand, 19994882 - 19994779
Alignment:
Q  41 agggagaagagagaaagagttcccgacaactcaatg-aaactctttgttgtgnnnnnnnaactgagtggagtcctctatttatatagagattttataacc 139  Q
    |||||||||||||||||||||| | ||||||||||  |||||||||| |||        ||||||||||||||||||||||||||||||||||| ||||     
T  19994882 agggagaagagagaaagagttctctacaactcaatataaactctttggtgtaatttttgaactgagtggagtcctctatttatatagagattttgtaact 19994783  T
Q  140 gttt 143  Q
    ||||    
T  19994782 gttt 19994779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 36 - 91
Target Start/End: Original strand, 19674393 - 19674448
Alignment:
Q  36 aagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtg 91  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||    
T  19674393 aagaaagggggaagagagaaagagttcccgacagctcaatgaaactctttggtgtg 19674448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 43 - 133
Target Start/End: Original strand, 17599980 - 17600071
Alignment:
Q  43 ggagaagagagaaagagttcccgacaactcaat-gaaactctttgttgtgnnnnnnnaactgagtggagtcctctatttatatagagatttt 133  Q
    |||||||||||||||||||  |||||||||||| ||||||||||  ||||       ||||||||| |||||||||||||| ||||||||||    
T  17599980 ggagaagagagaaagagttttcgacaactcaatagaaactctttagtgtgatttttgaactgagtgaagtcctctatttatttagagatttt 17600071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 52 - 138
Target Start/End: Original strand, 5856602 - 5856689
Alignment:
Q  52 agaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnn-aactgagtggagtcctctatttatatagagattttataac 138  Q
    ||||||||||||| |||||||||||| |||||||| |||         |||||||| |||||||||||||||||||||||||| ||||    
T  5856602 agaaagagttcccaacaactcaatgatactctttgatgttttttttttaactgagtagagtcctctatttatatagagattttgtaac 5856689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 132
Target Start/End: Complemental strand, 12405841 - 12405754
Alignment:
Q  46 gaagagagaaagagttcccgacaactcaa-tgaaactctttgttgtgnnnnnnnaactgagtggagtcctctatttatatagagattt 132  Q
    ||||||||||||||||| ||||||||||| ||||||| |||| ||||       || ||||||||||  |||||||||||| ||||||    
T  12405841 gaagagagaaagagttctcgacaactcaattgaaactttttggtgtgttttttgaattgagtggagttttctatttatataaagattt 12405754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 143
Target Start/End: Complemental strand, 22694838 - 22694747
Alignment:
Q  53 gaaagagttcccgacaactcaat-gaaactctttgttgtgnnnnnnnaactgagtggagtcctctatttatatagagattttataaccgttt 143  Q
    |||||||||| |||||| ||||| ||||||||||| ||||       |||| |||||| |||||| |||||||||||||||| |||| ||||    
T  22694838 gaaagagttctcgacaagtcaatagaaactctttggtgtgatttttgaacttagtggaatcctctgtttatatagagattttgtaactgttt 22694747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 131
Target Start/End: Original strand, 8748429 - 8748461
Alignment:
Q  99 aactgagtggagtcctctatttatatagagatt 131  Q
    |||| ||||||||||||||||||||||||||||    
T  8748429 aactaagtggagtcctctatttatatagagatt 8748461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 138
Target Start/End: Original strand, 17914255 - 17914294
Alignment:
Q  99 aactgagtggagtcctctatttatatagagattttataac 138  Q
    ||||||| ||||||||||||| ||||||||||||| ||||    
T  17914255 aactgaggggagtcctctattaatatagagattttgtaac 17914294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 4e-42; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 4e-42
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 1934517 - 1934386
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtg-nnnnnnna 99  Q
    |||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||        |    
T  1934517 gagatgaagagaagaaagactcgtcaacacaagtcaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttggtgtgtttttttga 1934418  T
Q  100 actgagtggagtcctctatttatatagagatt 131  Q
    ||||||||||||||||||||||||||||||||    
T  1934417 actgagtggagtcctctatttatatagagatt 1934386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 9180250 - 9180121
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaa 100  Q
    |||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||       ||    
T  9180250 gagatgaagagaagaaagactcgtcaacacaagtcaagaaagggagaagagagaaagagttcccgacatctcaatgaaactctttggtgtg-tttttgaa 9180152  T
Q  101 ctgagtggagtcctctatttatatagagatt 131  Q
    || ||||||||||||||||||||||||||||    
T  9180151 cttagtggagtcctctatttatatagagatt 9180121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 9184941 - 9184812
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaa 100  Q
    |||||||||||||||||| ||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||    
T  9184941 gagatgaagagaagaaaggctcgtcaacacaagtcaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttggtgtg-tttttgaa 9184843  T
Q  101 ctgagtggagtcctctatttatatagagatt 131  Q
    || ||||||||||||||||||||||||||||    
T  9184842 cttagtggagtcctctatttatatagagatt 9184812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 1e-36
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 25477818 - 25477688
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaa 100  Q
    |||||||||||||||||||||||||| ||||| | ||||||| ||||||||||||| || |||||||||||||||||||||||||| ||||       ||    
T  25477818 gagatgaagagaagaaagactcgtcaacacaagtcaagaaagagagaagagagaaatagctcccgacaactcaatgaaactctttggtgtgttttttgaa 25477719  T
Q  101 ctgagtggagtcctctatttatatagagatt 131  Q
     ||||||||||||||||||||||||||||||    
T  25477718 ttgagtggagtcctctatttatatagagatt 25477688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 30651489 - 30651615
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaa 100  Q
    |||||||||||||||||||||||||| ||||| |     |||||||||||||||||||||||||||||||||||| |||||||||| ||||       ||    
T  30651489 gagatgaagagaagaaagactcgtcaacacaagt----caagggagaagagagaaagagttcccgacaactcaataaaactctttggtgtgttttttgaa 30651584  T
Q  101 ctgagtggagtcctctatttatatagagatt 131  Q
    |||||||||||||||||||||||||||||||    
T  30651585 ctgagtggagtcctctatttatatagagatt 30651615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 12797498 - 12797638
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaa 100  Q
    |||||||||||||||||||||||||| ||||| | ||||||||||||||||| |||||||| ||||||||||||||||||||||||  |||       ||    
T  12797498 gagatgaagagaagaaagactcgtcaacacaagtcaagaaagggagaagagataaagagtttccgacaactcaatgaaactctttg--gtgttttttaaa 12797595  T
Q  101 ctgagtggagtcctctatttatatagagattttataaccgttt 143  Q
     |||||| ||||||||||||||||||||| ||| |||| ||||    
T  12797596 ttgagtgcagtcctctatttatatagagaatttgtaactgttt 12797638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 67; E-Value: 4e-30
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 31327324 - 31327414
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtg 91  Q
    ||||||||||||||||||||| |||| ||||| | || |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31327324 gagatgaagagaagaaagacttgtcaacacaagtcaaaaaagggagaagagagaaagagttcccgacaactcaatgaaactctttggtgtg 31327414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 6e-29
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 29678329 - 29678457
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtg-nnnnnnna 99  Q
    |||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||        |    
T  29678329 gagatgaagagaagaaagactcgtcaacacaagtcaagaaagggagaagagagaaagagtt-ccgacaactcaatgaaattctttgatgtgtttttttaa 29678427  T
Q  100 actgagtggagtcctctatttatatagaga 129  Q
    ||| |||||||||||| |||||||||||||    
T  29678428 actaagtggagtcctcaatttatatagaga 29678457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 60; E-Value: 6e-26
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 7737382 - 7737307
Alignment:
Q  4 atgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaa 79  Q
    |||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  7737382 atgaagagaagaaaaactcgtcaacacaaatcaagaaagggagaagagagaaagagtttccgacaactcaatgaaa 7737307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 25496846 - 25496786
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagtt 61  Q
    ||||||||||||||||||| |||||| ||||| | ||||||||||||||||||||||||||    
T  25496846 gagatgaagagaagaaagattcgtcaacacaagtcaagaaagggagaagagagaaagagtt 25496786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 40 - 91
Target Start/End: Complemental strand, 17453099 - 17453048
Alignment:
Q  40 aagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtg 91  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||| ||||    
T  17453099 aagggagaagagagaaagagttctcgacaactcaataaaactctttggtgtg 17453048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 19094067 - 19094012
Alignment:
Q  2 agatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaag 57  Q
    |||||||||||||||| |||||||| ||||| | ||||||||||||||||| ||||    
T  19094067 agatgaagagaagaaatactcgtcaacacaagtaaagaaagggagaagagaaaaag 19094012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 131
Target Start/End: Original strand, 12360917 - 12360949
Alignment:
Q  99 aactgagtggagtcctctatttatatagagatt 131  Q
    |||| ||||||||||||||||||||||||||||    
T  12360917 aactaagtggagtcctctatttatatagagatt 12360949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 131
Target Start/End: Complemental strand, 17968389 - 17968357
Alignment:
Q  99 aactgagtggagtcctctatttatatagagatt 131  Q
    |||| ||||||||||||||||||||||||||||    
T  17968389 aactaagtggagtcctctatttatatagagatt 17968357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 131
Target Start/End: Complemental strand, 19891906 - 19891874
Alignment:
Q  99 aactgagtggagtcctctatttatatagagatt 131  Q
    |||| ||||||||||||||||||||||||||||    
T  19891906 aactaagtggagtcctctatttatatagagatt 19891874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 103 - 130
Target Start/End: Complemental strand, 34495521 - 34495494
Alignment:
Q  103 gagtggagtcctctatttatatagagat 130  Q
    ||||||||||||||||||||||||||||    
T  34495521 gagtggagtcctctatttatatagagat 34495494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 42926166 - 42926135
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaa 32  Q
    |||||||||||||||||||||||||| |||||    
T  42926166 gagatgaagagaagaaagactcgtcaacacaa 42926135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 1e-39; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 37248324 - 37248196
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaa 100  Q
    |||||||||||||||||||||||||| ||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||  |||       ||    
T  37248324 gagatgaagagaagaaagactcgtcaacacaagtcaagaaagagagaagagagaaagagttcccgacaactcaatgaaactctttg--gtgttttttgaa 37248227  T
Q  101 ctgagtggagtcctctatttatatagagatt 131  Q
    |||||||||||||||||||||||||||||||    
T  37248226 ctgagtggagtcctctatttatatagagatt 37248196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 4e-39
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 20180679 - 20180549
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaa 100  Q
    |||||||||| ||||||||||||||| ||||| | ||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||       ||    
T  20180679 gagatgaagaaaagaaagactcgtcaacacaagtcaagaaagggagaagagataaacagttcccgacaactcaatgaaactctttggtgtgatttttgaa 20180580  T
Q  101 ctgagtggagtcctctatttatatagagatt 131  Q
    |||||||||||||||||||||||||||||||    
T  20180579 ctgagtggagtcctctatttatatagagatt 20180549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 12103599 - 12103739
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaa 100  Q
    |||||||||||||||||||||||||| ||||| | || |||||||||||||||  |||||||||||||||||||||||||| |||| ||||       ||    
T  12103599 gagatgaagagaagaaagactcgtcaacacaagtcaataaagggagaagagag--agagttcccgacaactcaatgaaactatttggtgtgtgttttaaa 12103696  T
Q  101 ctgagtggagtcctctatttatatagagattttataaccgttt 143  Q
    ||||||||||||||||||||||||||||||||| |||| ||||    
T  12103697 ctgagtggagtcctctatttatatagagattttgtaactgttt 12103739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 39518970 - 39519096
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaa 100  Q
    |||||||||||||||||||||||||| ||||| |     |||||||||||||||||||||||||||||||||||| |||||||||| ||||       ||    
T  39518970 gagatgaagagaagaaagactcgtcaacacaagt----caagggagaagagagaaagagttcccgacaactcaataaaactctttggtgtgttttttgaa 39519065  T
Q  101 ctgagtggagtcctctatttatatagagatt 131  Q
    |||||||||||||||||||||||||||||||    
T  39519066 ctgagtggagtcctctatttatatagagatt 39519096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 2 - 137
Target Start/End: Original strand, 40148470 - 40148603
Alignment:
Q  2 agatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaac 101  Q
    ||||||||||||||||||||||||| ||||| | ||||||||||||||||||  ||||||||||||||||||||||||||||||  ||||       |||    
T  40148470 agatgaagagaagaaagactcgtcaacacaagtcaagaaagggagaagagag--agagttcccgacaactcaatgaaactctttcgtgtgttttttgaac 40148567  T
Q  102 tgagtggagtcctctatttatatagagattttataa 137  Q
    | |||| |||||| |||||||||||||||| |||||    
T  40148568 taagtgaagtcctttatttatatagagattctataa 40148603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 4872473 - 4872557
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttg 86  Q
    |||||||||||||||||||||||||| ||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  4872473 gagatgaagagaagaaagactcgtcaacacaagtcaagaa-gggagaagagagaaagagttcccgacaactcaatgaaactctttg 4872557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 6e-29
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 39523609 - 39523735
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaa 100  Q
    |||||||||||||||||||||||||| ||||| |     ||||||||||||||||||||||||||||||||| || ||| |||||| ||||       ||    
T  39523609 gagatgaagagaagaaagactcgtcaacacaagt----caagggagaagagagaaagagttcccgacaactcgataaaattctttggtgtgttttttgaa 39523704  T
Q  101 ctgagtggagtcctctatttatatagagatt 131  Q
    |||||||||||||||||||||||||||||||    
T  39523705 ctgagtggagtcctctatttatatagagatt 39523735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 6e-23
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 9726277 - 9726187
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtg 91  Q
    ||||||||||||||||||||| |||| ||||| | || ||| ||||||||||||||||||| ||||||| |||||||||||||||| ||||    
T  9726277 gagatgaagagaagaaagactagtcaacacaagtcaaaaaatggagaagagagaaagagtttccgacaattcaatgaaactctttggtgtg 9726187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 35679411 - 35679322
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtg 91  Q
    |||||||||| ||||| |||||||||  |||| | ||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  35679411 gagatgaagaaaagaa-gactcgtcaatacaagtcaagaaggggagaagaaagaaagagttcccgacaactcaatgaaactctttggtgtg 35679322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 60 - 131
Target Start/End: Complemental strand, 6512102 - 6512031
Alignment:
Q  60 ttcccgacaactcaatgaaactctttgttgtgnnnnnnnaactgagtggagtcctctatttatatagagatt 131  Q
    ||||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||||||||    
T  6512102 ttcccgacaactcaatgaaactctttgatgtgttttttgaactgagtggagtcctctatttatatagagatt 6512031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 6513437 - 6513375
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcc 63  Q
    |||||||||| ||||||||||||||| ||||| | ||||||||||||||||||||||||||||    
T  6513437 gagatgaagaaaagaaagactcgtcaacacaagtaaagaaagggagaagagagaaagagttcc 6513375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 41 - 133
Target Start/End: Complemental strand, 16115717 - 16115625
Alignment:
Q  41 agggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaactgagtggagtcctctatttatatagagatttt 133  Q
    ||||||| ||||||||||||||   ||||||||||  ||||||||| ||||       ||||||||||| |||||| ||||||||||||||||    
T  16115717 agggagatgagagaaagagttcttaacaactcaatataactctttggtgtgatttttgaactgagtggaatcctctgtttatatagagatttt 16115625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 86
Target Start/End: Original strand, 15149294 - 15149339
Alignment:
Q  41 agggagaagagagaaagagttcccgacaactcaatgaaactctttg 86  Q
    ||||||||||||||||||||| |||| |||||||| ||||||||||    
T  15149294 agggagaagagagaaagagttgccgataactcaataaaactctttg 15149339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 131
Target Start/End: Original strand, 26667947 - 26667979
Alignment:
Q  99 aactgagtggagtcctctatttatatagagatt 131  Q
    |||| ||||||||||||||||||||||||||||    
T  26667947 aactaagtggagtcctctatttatatagagatt 26667979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 131
Target Start/End: Original strand, 26939544 - 26939576
Alignment:
Q  99 aactgagtggagtcctctatttatatagagatt 131  Q
    |||| ||||||||||||||||||||||||||||    
T  26939544 aactaagtggagtcctctatttatatagagatt 26939576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 131
Target Start/End: Original strand, 36424307 - 36424339
Alignment:
Q  99 aactgagtggagtcctctatttatatagagatt 131  Q
    |||| ||||||||||||||||||||||||||||    
T  36424307 aactaagtggagtcctctatttatatagagatt 36424339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 104 - 131
Target Start/End: Complemental strand, 37537360 - 37537333
Alignment:
Q  104 agtggagtcctctatttatatagagatt 131  Q
    ||||||||||||||||||||||||||||    
T  37537360 agtggagtcctctatttatatagagatt 37537333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 104 - 131
Target Start/End: Complemental strand, 37646479 - 37646452
Alignment:
Q  104 agtggagtcctctatttatatagagatt 131  Q
    ||||||||||||||||||||||||||||    
T  37646479 agtggagtcctctatttatatagagatt 37646452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 81; Significance: 2e-38; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 29747 - 29888
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtgnnnnnnnaa 100  Q
    |||||||||||||||||||||||||| ||||| | ||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||       ||    
T  29747 gagatgaagagaagaaagactcgtcaacacaagtcaagaaagggagaagagagaaaaagtttccgacaactcaatgaaactctttggtgtg-tttttgaa 29845  T
Q  101 ctgagtggagtcctctatttatatagagattttataaccgttt 143  Q
    |||| |||||||||||||||||||||||||| |||||| ||||    
T  29846 ctgattggagtcctctatttatatagagattctataactgttt 29888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 67; E-Value: 4e-30
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 26027 - 26117
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtg 91  Q
    |||||||||||||||||||||| ||| ||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  26027 gagatgaagagaagaaagactcatcaacacaagtcaagaaagggagaagagagaaagagttcccggcaactcaatgaaactctttggtgtg 26117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 7678 - 7809
Alignment:
Q  1 gagatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtg-nnnnnnna 99  Q
    |||||||||| ||||| ||||||||| ||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||        |    
T  7678 gagatgaagataagaacgactcgtcaacacaagtcaagaaagggagaaaagagaaagagttcccgacaactcaatgaaactctttggtgtgtttttttga 7777  T
Q  100 actgagtggagtcctctatttatatagagatt 131  Q
    || |||||||||||||||||||||||||||||    
T  7778 accgagtggagtcctctatttatatagagatt 7809  T

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Target: scaffold0011 (Bit Score: 58; Significance: 9e-25; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 58; E-Value: 9e-25
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 145945 - 145856
Alignment:
Q  2 agatgaagagaagaaagactcgtcagcacaaattaagaaagggagaagagagaaagagttcccgacaactcaatgaaactctttgttgtg 91  Q
    ||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||  ||||||||||||  ||||||||| ||||    
T  145945 agatgaagaaaagaaagactcgtcagcacaagtcaagaaagggagaagagagaaagagttatcgacaactcaatagaactctttggtgtg 145856  T

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Target: scaffold0690 (Bit Score: 43; Significance: 8e-16; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 41 - 143
Target Start/End: Original strand, 5839 - 5942
Alignment:
Q  41 agggagaagagagaaagagttcccgacaactcaatgaaa-ctctttgttgtgnnnnnnnaactgagtggagtcctctatttatatagagattttataacc 139  Q
    |||||||||||||||||||||  |||||||||||| ||| ||||||| |||        |||| |||||||||||||||||||||||||||||| ||||     
T  5839 agggagaagagagaaagagttatcgacaactcaataaaaactctttggtgtctctttcgaactaagtggagtcctctatttatatagagattttgtaact 5938  T
Q  140 gttt 143  Q
    ||||    
T  5939 gttt 5942  T

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