View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5875-2 (Length: 268)
Name: Solexa-NF5875-2
Description: NF5875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5875-2 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 8 - 268
Target Start/End: Original strand, 7659565 - 7659825
Alignment:
| Q |
8 |
ggtcctgccccacaccagtctattgcagccttggcaaaaatccatggccctttgatgcacctcaaattaggttttgtggacgttatcgtggcggcttcag |
107 |
Q |
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| T |
7659565 |
ggtcctgccccacaccagtctattgcagccttggcaaaaattcatggccctttgatgcacctcaaattaggttttgtggacgttatcgtggcggcttctg |
7659664 |
T |
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| Q |
108 |
gctccgttgccgaacaattcttaaaggttcatgatgctaactttagtagccggccacccaacaccggagctaaatatatagcttataactatcaagatct |
207 |
Q |
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| T |
7659665 |
gctccgttgccgaacaattcttaaaggttcatgatgctaactttagtagccggccacccaacaccggagctaaatatatagcttataactatcaagacct |
7659764 |
T |
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| Q |
208 |
tgtgtttgcaccttatggtccacggtggcgaatgctccgaaaaatctcctcagttcatctc |
268 |
Q |
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| T |
7659765 |
tgtgtttgcaccttatggtccgcggtggcgaatgctccgaaaaatctcctcagttcatctc |
7659825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 8 - 268
Target Start/End: Complemental strand, 7624120 - 7623860
Alignment:
| Q |
8 |
ggtcctgccccacaccagtctattgcagccttggcaaaaatccatggccctttgatgcacctcaaattaggttttgtggacgttatcgtggcggcttcag |
107 |
Q |
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| T |
7624120 |
ggtcctgccccacaccagtctattgcagccttggcaaaaatccatggccctttaatgcacctcaaattaggttttgtggacgttatcgtggcggcttcag |
7624021 |
T |
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| Q |
108 |
gctccgttgccgaacaattcttaaaggttcatgatgctaactttagtagccggccacccaacaccggagctaaatatatagcttataactatcaagatct |
207 |
Q |
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| T |
7624020 |
gctccgttgccgaacaattcttaaaggttcatgatgctaactttagtagccggccacccaacaccggagctaaatatatagcttataactatcaagatct |
7623921 |
T |
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| Q |
208 |
tgtgtttgcaccttatggtccacggtggcgaatgctccgaaaaatctcctcagttcatctc |
268 |
Q |
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| T |
7623920 |
tgtgtttgccccttatggtccgaggtggcgaatgctccgaaaaatctcctccgttcatctc |
7623860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 11 - 253
Target Start/End: Original strand, 7675195 - 7675437
Alignment:
| Q |
11 |
cctgccccacaccagtctattgcagccttggcaaaaatccatggccctttgatgcacctcaaattaggttttgtggacgttatcgtggcggcttcaggct |
110 |
Q |
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| T |
7675195 |
cctgcaccacaccaatctcttgcaaccttggctgaaacctatggccctttgatgcacctcaaattaggctcggtggatgtgatcgtggcggcttcggcct |
7675294 |
T |
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| Q |
111 |
ccgttgccgaacaattcttaaaggttcatgatgctaactttagtagccggccacccaacaccggagctaaatatatagcttataactatcaagatcttgt |
210 |
Q |
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| T |
7675295 |
ccgtggcggaacaattcttaaaggtacatgatgctaactttagtagccggccacccaatgccggagctaagtacataggttataattatcaagaccttgt |
7675394 |
T |
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| Q |
211 |
gtttgcaccttatggtccacggtggcgaatgctccgaaaaatc |
253 |
Q |
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| T |
7675395 |
gtttggtccttatggtccaaggtggcgactactcagaaaaatc |
7675437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 98 - 237
Target Start/End: Original strand, 45477623 - 45477762
Alignment:
| Q |
98 |
gcggcttcaggctccgttgccgaacaattcttaaaggttcatgatgctaactttagtagccggccacccaacaccggagctaaatatatagcttataact |
197 |
Q |
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| T |
45477623 |
gcggcttccgcctcggtcgctgaacaattcttaaaagttcatgataccaatttttctagccggccaactaactccggcgccaaatacttagcatataatt |
45477722 |
T |
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| Q |
198 |
atcaagatcttgtgtttgcaccttatggtccacggtggcg |
237 |
Q |
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| T |
45477723 |
atcaagatcttgtttttgctccttatggaccacggtggcg |
45477762 |
T |
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