View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5875-20 (Length: 142)
Name: Solexa-NF5875-20
Description: NF5875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5875-20 |
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| [»] scaffold0137 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: scaffold0137 (Bit Score: 127; Significance: 6e-66; HSPs: 1)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 127; E-Value: 6e-66
Query Start/End: Original strand, 8 - 142
Target Start/End: Original strand, 4349 - 4483
Alignment:
| Q |
8 |
caatgattattaatcaaaatgctttgacgtgatgattatggtatagacattttaccatgtcatcaaaagtccagagggtgatgttgtttctcaaaagttg |
107 |
Q |
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| T |
4349 |
caatgattattaatcaaaatgctttgacgtgatgattattgtatagacattttaccgtgtcatcaaaagtccagagggtgatgttgtttctcaaaagttg |
4448 |
T |
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| Q |
108 |
catgcgaaccgtgctgtctttgtagtattcatctc |
142 |
Q |
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| T |
4449 |
catgcgaaccgtgctgtctttgtagtattcatctc |
4483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 127; Significance: 6e-66; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 6e-66
Query Start/End: Original strand, 8 - 142
Target Start/End: Original strand, 3896695 - 3896829
Alignment:
| Q |
8 |
caatgattattaatcaaaatgctttgacgtgatgattatggtatagacattttaccatgtcatcaaaagtccagagggtgatgttgtttctcaaaagttg |
107 |
Q |
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| T |
3896695 |
caatgattattaatcaaaatgctttgacgtgatgattattgtatagacattttaccatgtcatcaaaagtccagaggatgatgttgtttctcaaaagttg |
3896794 |
T |
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| Q |
108 |
catgcgaaccgtgctgtctttgtagtattcatctc |
142 |
Q |
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| T |
3896795 |
catgcgaaccgtgctgtctttgtagtattcatctc |
3896829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 54 - 142
Target Start/End: Complemental strand, 46285194 - 46285106
Alignment:
| Q |
54 |
acattttaccatgtcatcaaaagtccagagggtgatgttgtttctcaaaagttgcatgcgaaccgtgctgtctttgtagtattcatctc |
142 |
Q |
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| T |
46285194 |
acattttacctggacatcagaagtccaaagggtgaggttgtctctcaaaagttgcattataagtgtgctgtctttgtaggattcttctc |
46285106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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