View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5875-25 (Length: 136)
Name: Solexa-NF5875-25
Description: NF5875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5875-25 |
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Alignment Details
Target: chr4 (Bit Score: 95; Significance: 7e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 7e-47
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 39908701 - 39908571
Alignment:
| Q |
4 |
gagaagaaatataccctagaaaaagacccaaagcccaaaggaaggaccacggcatcgttcaaatagaaaaccatatgat-nnnnnnnnttaatgatgttt |
102 |
Q |
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| T |
39908701 |
gagaagaaatataccctagaaaaagacccaaagcccaaaggaaggaccacggcatcgttcaaatagaaaaccatatgataaaaaaaatttaatgatgttt |
39908602 |
T |
|
| Q |
103 |
tgaaaaacaatcaagaagaagaacatgtgta |
133 |
Q |
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|||||| |||||||||||||||||||||||| |
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| T |
39908601 |
tgaaaaccaatcaagaagaagaacatgtgta |
39908571 |
T |
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