View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5875-26 (Length: 136)
Name: Solexa-NF5875-26
Description: NF5875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5875-26 |
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| [»] chr5 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 132; Significance: 6e-69; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 6e-69
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 36341908 - 36342043
Alignment:
| Q |
1 |
agcataggccaaattggaaacaaagaggaagcatgcgatattctcaattatatacaggttacaacaataacttggctgatcacaaattaaagtcagcact |
100 |
Q |
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| T |
36341908 |
agcataggccaaattggaaacaaagaggaagcatgtgatattctcaattatatacaggttacaacaataacttggctgatcacaaattaaagtcagcact |
36342007 |
T |
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| Q |
101 |
gattcagagagatattctcaattcaaattcaaatat |
136 |
Q |
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| T |
36342008 |
gattcagagagatattctcaattcaaattcaaatat |
36342043 |
T |
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Target: chr3 (Bit Score: 84; Significance: 3e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 3e-40
Query Start/End: Original strand, 49 - 136
Target Start/End: Original strand, 39865270 - 39865357
Alignment:
| Q |
49 |
tatatacaggttacaacaataacttggctgatcacaaattaaagtcagcactgattcagagagatattctcaattcaaattcaaatat |
136 |
Q |
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| T |
39865270 |
tatatacaggttacaacaataacttggctgatcgcaaattaaagtcagcactgattcagagagatattctcaattcaaattcaaatat |
39865357 |
T |
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