View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5875-3 (Length: 250)
Name: Solexa-NF5875-3
Description: NF5875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5875-3 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 19412803 - 19413045
Alignment:
| Q |
8 |
ctgattcattttgtcacaatcataataaacacaatcactttattaaacacaattaaattcactcaaacacaaaaatgtaattttaatctgattctccaaa |
107 |
Q |
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| T |
19412803 |
ctgattcattttgtcataatcataataaacacaatcactttattaaacacaattaaattcactcaaacacaaaaatgtaattttaatctgattctccaaa |
19412902 |
T |
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| Q |
108 |
atattgtaaattgaacatatctttacacacgctgattctttaattaattttaattttaatctgtacaacatatattgtcatatcaaaaaggttcaattaa |
207 |
Q |
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| T |
19412903 |
atattgtaaattgaacatatctttacacacgctgattctttaattaattttaattttaatctgtacaacatatattgtcatatcaaaaaggttcaattaa |
19413002 |
T |
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| Q |
208 |
tataattgttatccacaaaatgttatatattaaacatttacca |
250 |
Q |
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| T |
19413003 |
tataattgttatccacaaaatgttatatattaaacatttacca |
19413045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 96 - 245
Target Start/End: Original strand, 19423299 - 19423446
Alignment:
| Q |
96 |
tgattctccaaaatattgtaaattgaacatatctttacacacgctgattctttaattaattttaattttaatctgtacaacatatattgtcatatcaaaa |
195 |
Q |
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| T |
19423299 |
tgattctccaaaatattgtaaattgaacatatcattacacacactaatgctttgattaat-----ttttaatctgtatggcatatattgtcatatcaaaa |
19423393 |
T |
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| Q |
196 |
aggttcaattaatata---attgttatccacaaaatgttatatattaaacatt |
245 |
Q |
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| T |
19423394 |
aggttcaaataatataattattgttatccacaaaatgttataaattaaacatt |
19423446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 23 - 101
Target Start/End: Original strand, 19423195 - 19423274
Alignment:
| Q |
23 |
acaatcataataaacacaatcactttattaaacacaattaaattcactcaaacac-aaaaatgtaattttaatctgattc |
101 |
Q |
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| T |
19423195 |
acaatcataataaacacaatcactttattaaacacaatcagattccctcaaatacaaaaaaagtaattttaatctgattc |
19423274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 176 - 240
Target Start/End: Original strand, 15529805 - 15529869
Alignment:
| Q |
176 |
catatattgtcatatcaaaaaggttcaattaatataattgttatccacaaaatgttatatattaa |
240 |
Q |
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| T |
15529805 |
catatattttcatatcaaaaaggttcaaataatttaattgttgtccacaaaatattataaattaa |
15529869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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