View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5875-33 (Length: 130)
Name: Solexa-NF5875-33
Description: NF5875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5875-33 |
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| [»] scaffold1005 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 108; Significance: 1e-54; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 1e-54
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 11497062 - 11496943
Alignment:
| Q |
8 |
cttgtaatctttctttctgttcaaaaaccaatctggaagcttgaattgacgaggattcgcaaccactgtcataatattactcaactctgcagcactcaat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
11497062 |
cttgtaatctttctttctgttcaaaaaccaatctggaaccttgaattgacgaggattcgcaaccactgtcataatattatccaactctgcagcactcaat |
11496963 |
T |
|
| Q |
108 |
ttaccagccctcatgttcat |
127 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
11496962 |
ttaccagccctcatgttcat |
11496943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 1e-54
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 11541391 - 11541272
Alignment:
| Q |
8 |
cttgtaatctttctttctgttcaaaaaccaatctggaagcttgaattgacgaggattcgcaaccactgtcataatattactcaactctgcagcactcaat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
11541391 |
cttgtaatctttctttctgttcaaaaaccaatctggaaccttgaattgacgaggattcgcaaccactgtcataatattatccaactctgcagcactcaat |
11541292 |
T |
|
| Q |
108 |
ttaccagccctcatgttcat |
127 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
11541291 |
ttaccagccctcatgttcat |
11541272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 104; E-Value: 3e-52
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 11504389 - 11504270
Alignment:
| Q |
8 |
cttgtaatctttctttctgttcaaaaaccaatctggaagcttgaattgacgaggattcgcaaccactgtcataatattactcaactctgcagcactcaat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
11504389 |
cttgtaatctttctttctgttcaaaaaccaatatggaaccttgaattgacgaggattcgcaaccactgtcataatattatccaactctgcagcactcaat |
11504290 |
T |
|
| Q |
108 |
ttaccagccctcatgttcat |
127 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
11504289 |
ttaccagccctcatgttcat |
11504270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 104; E-Value: 3e-52
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 11511783 - 11511664
Alignment:
| Q |
8 |
cttgtaatctttctttctgttcaaaaaccaatctggaagcttgaattgacgaggattcgcaaccactgtcataatattactcaactctgcagcactcaat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
11511783 |
cttgtaatctttctttctgttcaaaaaccaatatggaaccttgaattgacgaggattcgcaaccactgtcataatattatccaactctgcagcactcaat |
11511684 |
T |
|
| Q |
108 |
ttaccagccctcatgttcat |
127 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
11511683 |
ttaccagccctcatgttcat |
11511664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 104; E-Value: 3e-52
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 11519159 - 11519040
Alignment:
| Q |
8 |
cttgtaatctttctttctgttcaaaaaccaatctggaagcttgaattgacgaggattcgcaaccactgtcataatattactcaactctgcagcactcaat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
11519159 |
cttgtaatctttctttctgttcaaaaaccaatatggaaccttgaattgacgaggattcgcaaccactgtcataatattatccaactctgcagcactcaat |
11519060 |
T |
|
| Q |
108 |
ttaccagccctcatgttcat |
127 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
11519059 |
ttaccagccctcatgttcat |
11519040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 104; E-Value: 3e-52
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 11526564 - 11526445
Alignment:
| Q |
8 |
cttgtaatctttctttctgttcaaaaaccaatctggaagcttgaattgacgaggattcgcaaccactgtcataatattactcaactctgcagcactcaat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
11526564 |
cttgtaatctttctttctgttcaaaaaccaatatggaaccttgaattgacgaggattcgcaaccactgtcataatattatccaactctgcagcactcaat |
11526465 |
T |
|
| Q |
108 |
ttaccagccctcatgttcat |
127 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
11526464 |
ttaccagccctcatgttcat |
11526445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 100; E-Value: 7e-50
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 11533974 - 11533855
Alignment:
| Q |
8 |
cttgtaatctttctttctgttcaaaaaccaatctggaagcttgaattgacgaggattcgcaaccactgtcataatattactcaactctgcagcactcaat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
11533974 |
cttgtaatctttctttctgttcaaaaaccaatatggaaccttgaattgacgaggattcgcaaccactgtcataatattatccaattctgcagcactcaat |
11533875 |
T |
|
| Q |
108 |
ttaccagccctcatgttcat |
127 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
11533874 |
ttaccagccctcatgttcat |
11533855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1005 (Bit Score: 100; Significance: 7e-50; HSPs: 1)
Name: scaffold1005
Description:
Target: scaffold1005; HSP #1
Raw Score: 100; E-Value: 7e-50
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 2534 - 2415
Alignment:
| Q |
8 |
cttgtaatctttctttctgttcaaaaaccaatctggaagcttgaattgacgaggattcgcaaccactgtcataatattactcaactctgcagcactcaat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
2534 |
cttgtaatctttctttctgttcaaaaaccaatttggaaccttgaattgacgaggattcgcaaccactgtcataatattatccaattctgcagcactcaat |
2435 |
T |
|
| Q |
108 |
ttaccagccctcatgttcat |
127 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
2434 |
ttaccagccctcatgttcat |
2415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 1e-42; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 1e-42
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 41556325 - 41556206
Alignment:
| Q |
8 |
cttgtaatctttctttctgttcaaaaaccaatctggaagcttgaattgacgaggattcgcaaccactgtcataatattactcaactctgcagcactcaat |
107 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||| |
|
|
| T |
41556325 |
cttgtaatccttctttctgttcaaaaaccaatctggaaccttgaattgacgaggattcgcaaccactatcataatattatccaactctgcagcacttaat |
41556226 |
T |
|
| Q |
108 |
ttaccagccctcatgttcat |
127 |
Q |
| |
|
| |||||||||| ||||||| |
|
|
| T |
41556225 |
tcaccagccctcttgttcat |
41556206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 4e-42
Query Start/End: Original strand, 8 - 118
Target Start/End: Complemental strand, 44179888 - 44179778
Alignment:
| Q |
8 |
cttgtaatctttctttctgttcaaaaaccaatctggaagcttgaattgacgaggattcgcaaccactgtcataatattactcaactctgcagcactcaat |
107 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
44179888 |
cttgtaatccttctttctgttcaaaaaccaatctggaaccttaaattgacgaggattcgcaaccactgtcataatattatccaactctgcagcactcaat |
44179789 |
T |
|
| Q |
108 |
ttaccagccct |
118 |
Q |
| |
|
| ||||||||| |
|
|
| T |
44179788 |
tcaccagccct |
44179778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 87; E-Value: 4e-42
Query Start/End: Original strand, 8 - 118
Target Start/End: Complemental strand, 44207019 - 44206909
Alignment:
| Q |
8 |
cttgtaatctttctttctgttcaaaaaccaatctggaagcttgaattgacgaggattcgcaaccactgtcataatattactcaactctgcagcactcaat |
107 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
44207019 |
cttgtaatccttctttctgttcaaaaaccaatctggaaccttaaattgacgaggattcgcaaccactgtcataatattatccaactctgcagcactcaat |
44206920 |
T |
|
| Q |
108 |
ttaccagccct |
118 |
Q |
| |
|
| ||||||||| |
|
|
| T |
44206919 |
tcaccagccct |
44206909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 4860455 - 4860519
Alignment:
| Q |
8 |
cttgtaatctttctttctgttcaaaaaccaatctggaagcttgaattgacgaggattcgcaacca |
72 |
Q |
| |
|
||||||||| ||||| || ||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4860455 |
cttgtaatccttcttcctattcaaaaaccaatctggaaccttgaattgacgaggattcgcaacca |
4860519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 14927216 - 14927142
Alignment:
| Q |
8 |
cttgtaatctttctttctgttcaaaaaccaatctggaagcttgaattgacgaggattcgcaaccactgtcataat |
82 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| || | ||||||||| | ||| || |||||||| |||||||| |
|
|
| T |
14927216 |
cttgtaatccttctttctgttcaaaaaccaatcagggaccttgaattgcctagggttggcaaccacagtcataat |
14927142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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