View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5875-35 (Length: 127)
Name: Solexa-NF5875-35
Description: NF5875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5875-35 |
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Alignment Details
Target: chr2 (Bit Score: 117; Significance: 5e-60; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 5e-60
Query Start/End: Original strand, 8 - 124
Target Start/End: Complemental strand, 32268137 - 32268021
Alignment:
| Q |
8 |
ttgtttgtgtatatttcagtaggaccaaatgattaatattccttaagtatatttctgtttgttgggtcaaaggcttatcgtgttgtactgccaaattcat |
107 |
Q |
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| T |
32268137 |
ttgtttgtgtatatttcagtaggaccaaatgattaatattccttaagtatatttctgtttgttgggtcaaaggcttatcgtgttgtactgccaaattcat |
32268038 |
T |
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| Q |
108 |
gtagtacgaatcccatc |
124 |
Q |
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||||||||||||||||| |
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| T |
32268037 |
gtagtacgaatcccatc |
32268021 |
T |
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Target: chr2; HSP #2
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 53 - 127
Target Start/End: Complemental strand, 32272293 - 32272219
Alignment:
| Q |
53 |
agtatatttctgtttgttgggtcaaaggcttatcgtgttgtactgccaaattcatgtagtacgaatcccatctgt |
127 |
Q |
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|||||||||||||||||| || ||| ||||||||| |||||||||||||||||| ||||| |||||| |||||| |
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| T |
32272293 |
agtatatttctgtttgttaggaaaaaagcttatcgtattgtactgccaaattcatctagtaagaatcctatctgt |
32272219 |
T |
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