View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5875-37 (Length: 127)

Name: Solexa-NF5875-37
Description: NF5875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5875-37
Solexa-NF5875-37
[»] chr5 (5 HSPs)
chr5 (6-127)||(34232648-34232769)
chr5 (10-127)||(42129009-42129126)
chr5 (10-127)||(42123624-42123741)
chr5 (24-115)||(34240409-34240500)
chr5 (10-125)||(42117890-42118004)
[»] chr2 (3 HSPs)
chr2 (10-127)||(12248586-12248703)
chr2 (55-127)||(11994271-11994343)
chr2 (12-91)||(32681765-32681844)
[»] chr6 (2 HSPs)
chr6 (10-127)||(25522881-25522998)
chr6 (10-125)||(24140957-24141072)
[»] chr4 (1 HSPs)
chr4 (10-127)||(11118269-11118386)


Alignment Details
Target: chr5 (Bit Score: 114; Significance: 3e-58; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 3e-58
Query Start/End: Original strand, 6 - 127
Target Start/End: Original strand, 34232648 - 34232769
Alignment:
Q  6 catatagaaggtcatttgcctaaatctttgtcccactgtaaaacgctggagtttctaaacctcgacagcaacaaaatagaagacaaatttcctgactgga 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  34232648 catatagaaggtcatttgcctaaatctttgtcccactgtaaaacgctggagtttctaaacctcggcagcaacaaaatagaagacaaatttcctgactgga 34232747  T
Q  106 ttcaaactctgcaagatttgaa 127  Q
    |||||||| |||||||||||||    
T  34232748 ttcaaactttgcaagatttgaa 34232769  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 10 - 127
Target Start/End: Complemental strand, 42129126 - 42129009
Alignment:
Q  10 tagaaggtcatttgcctaaatctttgtcccactgtaaaacgctggagtttctaaacctcgacagcaacaaaatagaagacaaatttcctgactggattca 109  Q
    ||||||||||||| || ||||| ||||| | ||||| || | ||||||||||||||||||  |||||||| ||||||||||| |||||||| ||| ||||    
T  42129126 tagaaggtcattttccaaaatccttgtctctctgtacaaagttggagtttctaaacctcggaagcaacaacatagaagacaattttcctgattggcttca 42129027  T
Q  110 aactctgcaagatttgaa 127  Q
    ||| |||||| |||||||    
T  42129026 aacactgcaatatttgaa 42129009  T

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Target: chr5; HSP #3
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 10 - 127
Target Start/End: Complemental strand, 42123741 - 42123624
Alignment:
Q  10 tagaaggtcatttgcctaaatctttgtcccactgtaaaacgctggagtttctaaacctcgacagcaacaaaatagaagacaaatttcctgactggattca 109  Q
    ||||||| ||||| || ||||| ||||| | |||||||  | | ||||||||||||||||  |||||||||||||||||||| |||||||| ||| ||||    
T  42123741 tagaaggccattttccaaaatccttgtctcgctgtaaagagttagagtttctaaacctcggtagcaacaaaatagaagacaattttcctgattggtttca 42123642  T
Q  110 aactctgcaagatttgaa 127  Q
    ||| || |||||||||||    
T  42123641 aacacttcaagatttgaa 42123624  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 115
Target Start/End: Original strand, 34240409 - 34240500
Alignment:
Q  24 cctaaatctttgtcccactgtaaaacgctggagtttctaaacctcgacagcaacaaaatagaagacaaatttcctgactggattcaaactct 115  Q
    ||||||||||||||||||||  |||  ||| |  ||||||| ||   || ||||||||| |||||||||||||||| |||| ||||||||||    
T  34240409 cctaaatctttgtcccactgcgaaaacctgcaagttctaaatcttcgcaacaacaaaatggaagacaaatttcctgtctggcttcaaactct 34240500  T

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Target: chr5; HSP #5
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 125
Target Start/End: Complemental strand, 42118004 - 42117890
Alignment:
Q  10 tagaaggtcatttgcctaaatctttgtcccactgtaaaacgctggagtttctaaacctcgacagcaacaaaatagaagacaaatttcctgactggattca 109  Q
    ||||||||||  | ||||||||||| || || |||||||  ||| ||||| ||||||| | ||||||||||||| |||| | |||||| | |||| ||||    
T  42118004 tagaaggtcagattcctaaatctttctctcattgtaaaaacctg-agtttttaaaccttggcagcaacaaaataaaagaaagatttcccgtctggcttca 42117906  T
Q  110 aactctgcaagatttg 125  Q
    ||| || ||| |||||    
T  42117905 aacactacaatatttg 42117890  T

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Target: chr2 (Bit Score: 50; Significance: 5e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 10 - 127
Target Start/End: Complemental strand, 12248703 - 12248586
Alignment:
Q  10 tagaaggtcatttgcctaaatctttgtcccactgtaaaacgctggagtttctaaacctcgacagcaacaaaatagaagacaaatttcctgactggattca 109  Q
    ||||||| ||| | |||| ||| ||||| | |||||||  | || ||||||||||||||| ||||||||||||||||||| | |||||||| ||| ||||    
T  12248703 tagaaggccatattcctagatccttgtctctctgtaaagggttgaagtttctaaacctcggcagcaacaaaatagaagacgagtttcctgattggcttca 12248604  T
Q  110 aactctgcaagatttgaa 127  Q
    ||| ||||||||||||||    
T  12248603 aacactgcaagatttgaa 12248586  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 55 - 127
Target Start/End: Original strand, 11994271 - 11994343
Alignment:
Q  55 agtttctaaacctcgacagcaacaaaatagaagacaaatttcctgactggattcaaactctgcaagatttgaa 127  Q
    ||||||||||||||| ||||||||||||||||||| | |||||||| ||| ||||||| ||||||||||||||    
T  11994271 agtttctaaacctcggcagcaacaaaatagaagacgagtttcctgattggcttcaaacactgcaagatttgaa 11994343  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 91
Target Start/End: Original strand, 32681765 - 32681844
Alignment:
Q  12 gaaggtcatttgcctaaatctttgtcccactgtaaaacgctggagtttctaaacctcgacagcaacaaaatagaagacaa 91  Q
    ||||| ||||| || ||||| |||||   |||||||| | ||||||||||||||||||  |||||||||||||| |||||    
T  32681765 gaaggccattttccgaaatccttgtctggctgtaaaaagttggagtttctaaacctcggaagcaacaaaatagacgacaa 32681844  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 10 - 127
Target Start/End: Original strand, 25522881 - 25522998
Alignment:
Q  10 tagaaggtcatttgcctaaatctttgtcccactgtaaaacgctggagtttctaaacctcgacagcaacaaaatagaagacaaatttcctgactggattca 109  Q
    ||||||||| ||| || |||||||||| ||  ||||||| | ||||||||||||||||||    |||||||||||||||||| ||||| || ||| ||||    
T  25522881 tagaaggtcgttttccgaaatctttgttccggtgtaaaaagttggagtttctaaacctcggggtcaacaaaatagaagacaattttccggattggcttca 25522980  T
Q  110 aactctgcaagatttgaa 127  Q
    |||  |||| ||||||||    
T  25522981 aacaatgcaggatttgaa 25522998  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 125
Target Start/End: Complemental strand, 24141072 - 24140957
Alignment:
Q  10 tagaaggtcatttgcctaaatctttgtcccactgtaaaacgctggagtttctaaacctcgacagcaacaaaatagaagacaaatttcctgactggattca 109  Q
    ||||||| ||||| || ||||| ||||| |  |||||||   |||||| ||||||||||| || |||||||||||||||||| ||| |||| ||| |||     
T  24141072 tagaaggccattttccgaaatccttgtctcgatgtaaaaatttggagtatctaaacctcggcaacaacaaaatagaagacaatttttctgattggcttct 24140973  T
Q  110 aactctgcaagatttg 125  Q
    ||| |||||| |||||    
T  24140972 aacactgcaatatttg 24140957  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 10 - 127
Target Start/End: Complemental strand, 11118386 - 11118269
Alignment:
Q  10 tagaaggtcatttgcctaaatctttgtcccactgtaaaacgctggagtttctaaacctcgacagcaacaaaatagaagacaaatttcctgactggattca 109  Q
    ||||||| ||||| || ||||| ||||| |  ||||||| | ||| |||||||||||||| |||||||| |||||||||||  |||||||| ||| ||||    
T  11118386 tagaaggccattttccaaaatccttgtctcggtgtaaaaagttggcgtttctaaacctcggcagcaacagaatagaagacagttttcctgattggcttca 11118287  T
Q  110 aactctgcaagatttgaa 127  Q
    |||  ||| |||||||||    
T  11118286 aacattgccagatttgaa 11118269  T

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