View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5875-45 (Length: 116)
Name: Solexa-NF5875-45
Description: NF5875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5875-45 |
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Alignment Details
Target: chr5 (Bit Score: 87; Significance: 3e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 3e-42
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 34241747 - 34241633
Alignment:
| Q |
1 |
gatgaagtataataacaccgaatcaaacactctaactccattttcatcctgggacatccaaaacatgaatgaaatgctcatgctgctgtctgctagtgtt |
100 |
Q |
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| T |
34241747 |
gatgaagtataataacacagaatcaaaaactctaactccattttcatcctggaaaatccaaaacatgaatgaaatgctcatgctgctgcctgctagtgtt |
34241648 |
T |
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| Q |
101 |
ggcctttctgagcat |
115 |
Q |
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|| ||||||| |||| |
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| T |
34241647 |
ggactttctgggcat |
34241633 |
T |
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