View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5875-5 (Length: 249)
Name: Solexa-NF5875-5
Description: NF5875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5875-5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 8 - 229
Target Start/End: Complemental strand, 2013623 - 2013402
Alignment:
| Q |
8 |
gtttcaccggtgccgttccattctcctcaatccaacctttgaagacacaaccgaatcctccctcgccaagaagactctcgggtcaaaaattcctagttgc |
107 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
2013623 |
gtttcactggtgcagttccattctcctcaatccaacctttgaatacacaaccgaatcctccctcaccaagaagactctcgggtcggaaattcctagttgc |
2013524 |
T |
|
| Q |
108 |
catctttagctcattgaatgtgaactttctcaaatcagaagaaaccttcaactcttcgctgaacattggagtggaagggatgctttctgcattactagtt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
2013523 |
catctttagctcattgaatgtgaactttctcaaatcagaagaaaccttcaactcttcgctgaacattggagtggaaggaatactttctgcattactagtt |
2013424 |
T |
|
| Q |
208 |
gtagaggatcctggaggagcac |
229 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
2013423 |
gtagaggatcctggaggagcac |
2013402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 8 - 170
Target Start/End: Complemental strand, 3168856 - 3168694
Alignment:
| Q |
8 |
gtttcaccggtgccgttccattctcctcaatccaacctttgaagacacaaccgaatcctccctcgccaagaagactctcgggtcaaaaattcctagttgc |
107 |
Q |
| |
|
||||||| || || ||||||||||| |||||||||||||||||||||||||| || ||||| || || |||||||| || |||| |||||||||||||| |
|
|
| T |
3168856 |
gtttcacaggcgcagttccattctcttcaatccaacctttgaagacacaaccaaaacctccttcacctagaagactttctggtctgaaattcctagttgc |
3168757 |
T |
|
| Q |
108 |
catctttagctcattgaatgtgaactttctcaaatcagaagaaaccttcaactcttcgctgaa |
170 |
Q |
| |
|
| ||| || ||||||||||||| ||||| ||| ||||| |||||||||||| |||||||| |
|
|
| T |
3168756 |
taccttaagtccattgaatgtgaattttcttaaacaagaagcaaccttcaactcctcgctgaa |
3168694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 25137988 - 25138105
Alignment:
| Q |
8 |
gtttcaccggtgccgttccattctcctcaatccaacctttgaagacacaaccgaatcctccctcgccaagaagactctcgggtcaaaaattcctagttgc |
107 |
Q |
| |
|
||||||| ||||| |||||||| || |||||||| |||||||| |||||||| ||||| || || || |||||||||||||| | |||||| || ||||| |
|
|
| T |
25137988 |
gtttcactggtgcagttccattttcttcaatccatcctttgaacacacaaccaaatccaccttcaccgagaagactctcgggccgaaaatttcttgttgc |
25138087 |
T |
|
| Q |
108 |
catctttagctcattgaa |
125 |
Q |
| |
|
|| ||| || |||||||| |
|
|
| T |
25138088 |
caacttaagatcattgaa |
25138105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 16888684 - 16888567
Alignment:
| Q |
8 |
gtttcaccggtgccgttccattctcctcaatccaacctttgaagacacaaccgaatcctccctcgccaagaagactctcgggtcaaaaattcctagttgc |
107 |
Q |
| |
|
||||||| || || |||||||| || ||||||||||||||||| |||||||| || || || |||||||||| |||||| || | ||||| || ||||| |
|
|
| T |
16888684 |
gtttcactggagcagttccattttcttcaatccaacctttgaaaacacaaccaaacccaccttcgccaagaaaactctcaggccggaaatttcttgttgc |
16888585 |
T |
|
| Q |
108 |
catctttagctcattgaa |
125 |
Q |
| |
|
|| ||| || |||||||| |
|
|
| T |
16888584 |
caacttaagttcattgaa |
16888567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University