View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5875-6 (Length: 226)
Name: Solexa-NF5875-6
Description: NF5875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5875-6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 39918241 - 39918466
Alignment:
| Q |
1 |
agcagagataggcaatgagacagtcggaatgatacgaggttgtatcaaaaccgttacatgcggcaaaaaactcacaagaccaacaaaaagcagcacagaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
39918241 |
agcagagataggcaatgagacagtcggaatgatacgaggttgtatcaaaaccgttacatgcggcaaaaaactcacaagaccaacaaaaaacagcacagaa |
39918340 |
T |
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| Q |
101 |
acaaatcaaaattccaatcatgtccctgttttcacaaaactagcctacgttttaggcttaagagtttctccaaatcatagaagaatgggaatagggctaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39918341 |
acaaatcaaaattccaatcatgtccctgttttcacaaaactagcctacgttttaggcttaagagtttctccaaatcatagaagaatgggaatagggctaa |
39918440 |
T |
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| Q |
201 |
aactggtagagaaaatggaacaatgg |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
39918441 |
aactggtagagaaaatggaacaatgg |
39918466 |
T |
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