View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5875-7 (Length: 216)
Name: Solexa-NF5875-7
Description: NF5875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5875-7 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 8 - 216
Target Start/End: Original strand, 50909942 - 50910150
Alignment:
| Q |
8 |
agaaaaacatagtgttccaacaagtattaatctattagacgcgtctttactgctttgggatggctaatacttaattgttgctggaacaggagccagttct |
107 |
Q |
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| T |
50909942 |
agaaaaacatagtgttccaacaagtattaatctattagacgcgtctttactgctttgggatggctaatacttaattgttgctggaacaggagccagttct |
50910041 |
T |
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| Q |
108 |
tccaggttcctttcccttacgaagttcagggcgagaaagatgacaagatattcgctgtctgtgcatgaaattcagggcaagaaagacgacaagatattcg |
207 |
Q |
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| T |
50910042 |
tccaggttcctttcccttacgaagttcagggcgagaaagatgacaagatattcgctgtctgtgcatgaaattcagggcaagaaagacgacaagatattcg |
50910141 |
T |
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| Q |
208 |
ctgtctgtg |
216 |
Q |
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||||||||| |
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| T |
50910142 |
ctgtctgtg |
50910150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 23 - 121
Target Start/End: Original strand, 50901041 - 50901143
Alignment:
| Q |
23 |
tccaacaagtattaatctattagacgcgtctt---tactgctttgggatggctaatacttaattgttgctggaaca-ggagccagttcttccaggttcct |
118 |
Q |
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|||| ||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||| || |
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| T |
50901041 |
tccaccaagtattaatctattagatgtgtcttctttactgctttgggatggctaatacttaattgttggtggaacagggagccggttcttccaggttgct |
50901140 |
T |
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| Q |
119 |
ttc |
121 |
Q |
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||| |
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| T |
50901141 |
ttc |
50901143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 171
Target Start/End: Original strand, 43548853 - 43548893
Alignment:
| Q |
131 |
gttcagggcgagaaagatgacaagatattcgctgtctgtgc |
171 |
Q |
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| T |
43548853 |
gttcagggcgagaaagatgacaagataattgctgtctgtgc |
43548893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 171
Target Start/End: Original strand, 50910112 - 50910151
Alignment:
| Q |
132 |
ttcagggcgagaaagatgacaagatattcgctgtctgtgc |
171 |
Q |
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| T |
50910112 |
ttcagggcaagaaagacgacaagatattcgctgtctgtgc |
50910151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 171
Target Start/End: Original strand, 50901265 - 50901303
Alignment:
| Q |
133 |
tcagggcgagaaagatgacaagatattcgctgtctgtgc |
171 |
Q |
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| T |
50901265 |
tcagggcgagaaagatgacaagataattgctgtctgtgc |
50901303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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