View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5875-9 (Length: 212)

Name: Solexa-NF5875-9
Description: NF5875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5875-9
Solexa-NF5875-9
[»] chr6 (3 HSPs)
chr6 (10-211)||(10117177-10117376)
chr6 (138-203)||(32296380-32296445)
chr6 (127-180)||(9177634-9177684)
[»] chr8 (3 HSPs)
chr8 (127-203)||(23490047-23490122)
chr8 (127-203)||(7154346-7154422)
chr8 (152-203)||(14867355-14867406)
[»] chr2 (8 HSPs)
chr2 (127-202)||(37794729-37794803)
chr2 (127-203)||(17989065-17989140)
chr2 (127-203)||(35016459-35016534)
chr2 (62-129)||(409818-409885)
chr2 (68-119)||(1399319-1399370)
chr2 (68-119)||(1403014-1403065)
chr2 (36-90)||(404557-404611)
chr2 (159-203)||(5428657-5428701)
[»] chr7 (7 HSPs)
chr7 (129-195)||(39653536-39653602)
chr7 (127-203)||(25635981-25636057)
chr7 (127-192)||(45435419-45435484)
chr7 (127-200)||(10493487-10493560)
chr7 (127-195)||(47363781-47363848)
chr7 (62-114)||(1446151-1446203)
chr7 (148-203)||(33049132-33049187)
[»] chr4 (7 HSPs)
chr4 (127-203)||(55606324-55606399)
chr4 (127-203)||(28146999-28147074)
chr4 (127-203)||(38411946-38412022)
chr4 (138-203)||(11440605-11440670)
chr4 (127-203)||(13198158-13198233)
chr4 (134-195)||(25968024-25968084)
chr4 (127-186)||(46308430-46308488)
[»] chr3 (5 HSPs)
chr3 (127-203)||(11783484-11783560)
chr3 (38-127)||(45810728-45810817)
chr3 (135-195)||(7299132-7299192)
chr3 (152-201)||(19596541-19596590)
chr3 (158-203)||(21926543-21926588)
[»] chr1 (6 HSPs)
chr1 (138-203)||(32617658-32617722)
chr1 (127-185)||(12990549-12990606)
chr1 (130-191)||(34664806-34664867)
chr1 (141-203)||(24699887-24699949)
chr1 (127-201)||(9457636-9457709)
chr1 (127-201)||(9461733-9461806)
[»] chr5 (5 HSPs)
chr5 (126-203)||(39426166-39426243)
chr5 (127-193)||(41283518-41283582)
chr5 (135-203)||(13424721-13424789)
chr5 (134-203)||(22927149-22927219)
chr5 (53-109)||(36198875-36198931)


Alignment Details
Target: chr6 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 10 - 211
Target Start/End: Complemental strand, 10117376 - 10117177
Alignment:
Q  10 gaaaacttaagataattaaaaagagcatatattaccatgtgttattgttatattccgatgaaagcactttcaaatttggagtttttaagcatacaactat 109  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  10117376 gaaaacttaagacaattaaaaagagcatatattaccatgtgttattgttatattccgatgaaagcactttcaaatttggagtttctaggcatacaactat 10117277  T
Q  110 tcaaggtttgtctcattatttggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatataattttcaattcat 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  10117276 tcaaggtttgtctcattatttggagttctaaactagataaggagat--tattatgtaatttatgatcaaatatgtactaaaaatatgattttcaattcat 10117179  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 32296445 - 32296380
Alignment:
Q  138 taaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatataattttca 203  Q
    ||||||| ||||||||||| |||||||||| |||||||||||||||||| |||||||| |||||||    
T  32296445 taaactatataaggagataccattatgtaacttatgatcaaatatgtactaaaaatatgattttca 32296380  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 180
Target Start/End: Complemental strand, 9177684 - 9177634
Alignment:
Q  127 atttggagttctaaactagataaggagataacattatgtaatttatgatcaaat 180  Q
    ||||||||||||||||||| |   ||||||||||||||||||||||||||||||    
T  9177684 atttggagttctaaactaggt---gagataacattatgtaatttatgatcaaat 9177634  T

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Target: chr8 (Bit Score: 61; Significance: 2e-26; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 23490047 - 23490122
Alignment:
Q  127 atttggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatataattttca 203  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||    
T  23490047 atttggagttctaaactagataaggagataac-ttatgtaatttatgatcaaatatgtacgaaaaatatgattttca 23490122  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 7154346 - 7154422
Alignment:
Q  127 atttggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatataattttca 203  Q
    |||| ||||||| ||  |||||||||||||  |||||||||| ||||||||||||||||  |||||||| |||||||    
T  7154346 attttgagttctgaatcagataaggagatataattatgtaatatatgatcaaatatgtattaaaaatatgattttca 7154422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 203
Target Start/End: Original strand, 14867355 - 14867406
Alignment:
Q  152 agataacattatgtaatttatgatcaaatatgtaccaaaaatataattttca 203  Q
    ||||||||| |||||||||||| |||||||||||| |||||| | |||||||    
T  14867355 agataacatcatgtaatttatgttcaaatatgtactaaaaatgtgattttca 14867406  T

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Target: chr2 (Bit Score: 60; Significance: 9e-26; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 37794729 - 37794803
Alignment:
Q  127 atttggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatataattttc 202  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||    
T  37794729 atttggagttctaaactagataaggagataac-ttatgtaatttatgatcaaatatgtactaaaaatatgattttc 37794803  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 17989065 - 17989140
Alignment:
Q  127 atttggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatataattttca 203  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||| |||||||    
T  17989065 atttggagttctaaactagataaggagataa-attatataatttatgatcaaatatgtactaaaaatatgattttca 17989140  T

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Target: chr2; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 35016459 - 35016534
Alignment:
Q  127 atttggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatataattttca 203  Q
    ||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||| |||||||    
T  35016459 atttggaattctaaactagataaggagataac-ttatataatttatgatcaaatatgtatcaaaaatatgattttca 35016534  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 129
Target Start/End: Original strand, 409818 - 409885
Alignment:
Q  62 ttccgatgaaagcactttcaaatttggagtttttaagcatacaactattcaaggtttgtctcattatt 129  Q
    ||||||||||| | |||||||||||||||||| || | |||||||||||  |||||||| || |||||    
T  409818 ttccgatgaaatcgctttcaaatttggagtttctacgtatacaactattggaggtttgtttcgttatt 409885  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 119
Target Start/End: Original strand, 1399319 - 1399370
Alignment:
Q  68 tgaaagcactttcaaatttggagtttttaagcatacaactattcaaggtttg 119  Q
    ||||| ||||||||||| |||||||| || |||||||||||| |||||||||    
T  1399319 tgaaatcactttcaaatgtggagtttctacgcatacaactatgcaaggtttg 1399370  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 119
Target Start/End: Original strand, 1403014 - 1403065
Alignment:
Q  68 tgaaagcactttcaaatttggagtttttaagcatacaactattcaaggtttg 119  Q
    ||||| ||||||||||| |||||||| || |||||||||||| |||||||||    
T  1403014 tgaaatcactttcaaatgtggagtttctacgcatacaactatgcaaggtttg 1403065  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 404557 - 404611
Alignment:
Q  36 atatattaccatgtgttattgttatattccgatgaaagcactttcaaatttggag 90  Q
    |||||||||| | | |||||| ||| ||||||||||||||||||||||| |||||    
T  404557 atatattaccctctattattgctattttccgatgaaagcactttcaaatgtggag 404611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 5428701 - 5428657
Alignment:
Q  159 attatgtaatttatgatcaaatatgtaccaaaaatataattttca 203  Q
    |||||||||||||||||||| ||||||| || ||||| |||||||    
T  5428701 attatgtaatttatgatcaattatgtactaataatatgattttca 5428657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 39653536 - 39653602
Alignment:
Q  129 ttggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatat 195  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  39653536 ttggagttctaaactagataaagagataacattatgtaatttatgatcaaatatgtactaaaaatat 39653602  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 25635981 - 25636057
Alignment:
Q  127 atttggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatataattttca 203  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||| |||| |||||||    
T  25635981 atttggagttctaaactagacaaggagataacattatgtaatttatgattaaatatgtactaaagatatgattttca 25636057  T

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Target: chr7; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 127 - 192
Target Start/End: Complemental strand, 45435484 - 45435419
Alignment:
Q  127 atttggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaa 192  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  45435484 atttgaagttctaaactagataaagagataacattatgtaatttatgatcaaatatgtactaaaaa 45435419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 127 - 200
Target Start/End: Original strand, 10493487 - 10493560
Alignment:
Q  127 atttggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatataattt 200  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |  |||||||| ||||    
T  10493487 atttggaggtctaaactatataaggagataacattatgtaatttatgatcaaatatgcattaaaaatatgattt 10493560  T

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Target: chr7; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 47363781 - 47363848
Alignment:
Q  127 atttggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatat 195  Q
    ||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||    
T  47363781 atttgaagttctaaactagataaggagataac-ttatgtaatctatgatcaaatatgtactaaaaatat 47363848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 1446203 - 1446151
Alignment:
Q  62 ttccgatgaaagcactttcaaatttggagtttttaagcatacaactattcaag 114  Q
    ||||||||||||||||||||||| |||||||| || ||||| |||||| ||||    
T  1446203 ttccgatgaaagcactttcaaatgtggagtttctacgcataaaactatacaag 1446151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 203
Target Start/End: Complemental strand, 33049187 - 33049132
Alignment:
Q  148 aaggagataacattatgtaatttatgatcaaatatgtaccaaaaatataattttca 203  Q
    ||||||||||| || ||||||||||| |||||||||||| |||||| | |||||||    
T  33049187 aaggagataaccttctgtaatttatgttcaaatatgtactaaaaatgtgattttca 33049132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 5e-24; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 55606324 - 55606399
Alignment:
Q  127 atttggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatataattttca 203  Q
    |||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  55606324 atttggagttctaaactatataaggaaataac-ttatgtaatttatgatcaaatatgtactaaaaatataattttca 55606399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 127 - 203
Target Start/End: Complemental strand, 28147074 - 28146999
Alignment:
Q  127 atttggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatataattttca 203  Q
    ||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||    
T  28147074 atttggaattctaaattagataaggagataac-ttatgtaatttatgatcaaatatgtactaaaaatatgattttca 28146999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 38411946 - 38412022
Alignment:
Q  127 atttggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatataattttca 203  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||  |||||||| |||||||    
T  38411946 atttggagttctaaactagataaggaaataacattatgtaatttataatcaagtatgtagtaaaaatatgattttca 38412022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 11440670 - 11440605
Alignment:
Q  138 taaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatataattttca 203  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  11440670 taaactatataagaagataacattatgtaatttatgatcaaatatgtactaaaaatatgattttca 11440605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 13198158 - 13198233
Alignment:
Q  127 atttggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatataattttca 203  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| || || ||||| |||||||    
T  13198158 atttggagttctaaattagataaggagataac-ttatgtaatttatgatcaaatatgcactaagaatatgattttca 13198233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 134 - 195
Target Start/End: Complemental strand, 25968084 - 25968024
Alignment:
Q  134 gttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatat 195  Q
    ||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||    
T  25968084 gttctaaactagataagaagataac-ttatgtaatttattatcaaatatgtaccaaaaatat 25968024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 127 - 186
Target Start/End: Original strand, 46308430 - 46308488
Alignment:
Q  127 atttggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgtac 186  Q
    |||| |||||||||||||  |||||||||||| |||||||||||||||||||||||||||    
T  46308430 atttagagttctaaactaactaaggagataac-ttatgtaatttatgatcaaatatgtac 46308488  T

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Target: chr3 (Bit Score: 57; Significance: 5e-24; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 11783484 - 11783560
Alignment:
Q  127 atttggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatataattttca 203  Q
    |||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||| |||||||| |||||||    
T  11783484 atttggagttctaaactagacaaggagacaacattgtgtaatttatgatcaaatatgtactaaaaatatgattttca 11783560  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 38 - 127
Target Start/End: Complemental strand, 45810817 - 45810728
Alignment:
Q  38 atattaccatgtgttattgttatattccgatgaaagcactttcaaatttggagtttttaagcatacaactattcaaggtttgtctcatta 127  Q
    ||||||| || |||||||| ||| ||||||||||||||||||| |||||||||||| |  |||| ||||||| | |||||||||||||||    
T  45810817 atattactatctgttattgctattttccgatgaaagcactttcgaatttggagtttctccgcattcaactatccgaggtttgtctcatta 45810728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 135 - 195
Target Start/End: Complemental strand, 7299192 - 7299132
Alignment:
Q  135 ttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatat 195  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||||||||  |||||||    
T  7299192 ttctaaagtagataaggagataacattatgtaatttatgattaaatatgtacttaaaatat 7299132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 19596541 - 19596590
Alignment:
Q  152 agataacattatgtaatttatgatcaaatatgtaccaaaaatataatttt 201  Q
    |||||||||||||||| ||||| |||||| ||||| |||||||| |||||    
T  19596541 agataacattatgtaacttatgttcaaatttgtactaaaaatatgatttt 19596590  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 21926543 - 21926588
Alignment:
Q  158 cattatgtaatttatgatcaaatatgtaccaaaaatataattttca 203  Q
    |||||||||||||||||| ||||||||||  ||||||| |||||||    
T  21926543 cattatgtaatttatgattaaatatgtactgaaaatatgattttca 21926588  T

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Target: chr1 (Bit Score: 50; Significance: 8e-20; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 32617658 - 32617722
Alignment:
Q  138 taaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatataattttca 203  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||    
T  32617658 taaactagataaggagataac-ttatgtaatttatgatcaaatatgtactaaaaatatgattttca 32617722  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 12990606 - 12990549
Alignment:
Q  127 atttggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgta 185  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  12990606 atttgaagttctaaactagataaggagataa-attatgtaatttatgatcaaatatgta 12990549  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 130 - 191
Target Start/End: Complemental strand, 34664867 - 34664806
Alignment:
Q  130 tggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaa 191  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||| ||||    
T  34664867 tggagttctaaactagataagaagataacgttatgtaatttatgatcaaatacgtactaaaa 34664806  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 141 - 203
Target Start/End: Original strand, 24699887 - 24699949
Alignment:
Q  141 actagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatataattttca 203  Q
    |||||||||  ||||||||||||||||| ||| ||||||||| ||| ||||||||||||||||    
T  24699887 actagataaaaagataacattatgtaatatattatcaaatatatacgaaaaatataattttca 24699949  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 127 - 201
Target Start/End: Complemental strand, 9457709 - 9457636
Alignment:
Q  127 atttggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatataatttt 201  Q
    |||| ||||||||||| || |||||||||||| | | |||||||||||||| ||||||| ||||||||| |||||    
T  9457709 attttgagttctaaacaaggtaaggagataacttga-gtaatttatgatcagatatgtatcaaaaatatgatttt 9457636  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 127 - 201
Target Start/End: Complemental strand, 9461806 - 9461733
Alignment:
Q  127 atttggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaatataatttt 201  Q
    |||| ||||||||||| || |||||||||||| | | |||||||||||||| ||||||| ||||||||| |||||    
T  9461806 attttgagttctaaacaaggtaaggagataacttga-gtaatttatgatcagatatgtatcaaaaatatgatttt 9461733  T

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Target: chr5 (Bit Score: 47; Significance: 5e-18; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 126 - 203
Target Start/End: Original strand, 39426166 - 39426243
Alignment:
Q  126 tatttggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaa-atataattttca 203  Q
    |||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||| |||| |||| |||||||    
T  39426166 tatttgga-ttctaaactatataaggagatgacattatgtaatttatgatcaaatatgtactaaaatatatgattttca 39426243  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 127 - 193
Target Start/End: Complemental strand, 41283582 - 41283518
Alignment:
Q  127 atttggagttctaaactagataaggagataacattatgtaatttatgatcaaatatgtaccaaaaat 193  Q
    ||||| |||||||||||||||||||||||||| |||| ||||||||||||| || ||||| ||||||    
T  41283582 atttgaagttctaaactagataaggagataac-ttat-taatttatgatcagatttgtactaaaaat 41283518  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 203
Target Start/End: Original strand, 13424721 - 13424789
Alignment:
Q  135 ttctaaactagat-aaggagataacattatgtaatttatgatcaaatatgtaccaaaaatataattttca 203  Q
    ||||||| ||||| ||||||||||| ||| || |||||||||||||||||||| |||||||| |||||||    
T  13424721 ttctaaaatagattaaggagataac-ttacgtgatttatgatcaaatatgtactaaaaatattattttca 13424789  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 203
Target Start/End: Original strand, 22927149 - 22927219
Alignment:
Q  134 gttctaaactagataaggagataacattatgtaatttatgatcaaa--tatgtaccaaaaatataattttca 203  Q
    ||||||||||||| || ||||||||| ||||| |||||||||||||  | ||||| |||||||| |||||||    
T  22927149 gttctaaactagacaatgagataaca-tatgtgatttatgatcaaatgtgtgtacaaaaaatatgattttca 22927219  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 109
Target Start/End: Original strand, 36198875 - 36198931
Alignment:
Q  53 attgttatattccgatgaaagcactttcaaatttggagtttttaagcatacaactat 109  Q
    ||||| ||||||| |||||||||||||  |||| ||||||| |||| ||||||||||    
T  36198875 attgtgatattccaatgaaagcactttttaattcggagtttctaagaatacaactat 36198931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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