View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5876-1 (Length: 288)
Name: Solexa-NF5876-1
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5876-1 |
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Alignment Details
Target: chr1 (Bit Score: 135; Significance: 1e-70; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 1e-70
Query Start/End: Original strand, 8 - 169
Target Start/End: Complemental strand, 2531294 - 2531133
Alignment:
| Q |
8 |
aatcttagtcaaagtggtctcaattttttgcaattttaatttcaaattttaatgaagaaaaacaaagcnnnnnnntctattggcttgcaactatgtatga |
107 |
Q |
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| T |
2531294 |
aatcttagtcaaagtggtctcaattttttgcaattttaatttcaaattttaatgaagaaaaacaaagcaaaaaaatctattggcttgcaactatgtatga |
2531195 |
T |
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| Q |
108 |
atctcacctcatatcawatcatacccaaacaaatatccaagtgccagcctttctaagctgta |
169 |
Q |
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| T |
2531194 |
atctcacctcatatcatatcatacacaaacaaatatccaagtgccagcctttctaagctgta |
2531133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 244 - 286
Target Start/End: Complemental strand, 2531056 - 2531014
Alignment:
| Q |
244 |
cactttgcttcaaaattgttgtgaaagattcatgtgtttcatc |
286 |
Q |
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| T |
2531056 |
cactttgcttcaaaattgttgtgaaagattcatgtgtttcatc |
2531014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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