View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5876-10 (Length: 154)

Name: Solexa-NF5876-10
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5876-10
Solexa-NF5876-10
[»] chr6 (4 HSPs)
chr6 (72-149)||(2996309-2996386)
chr6 (5-71)||(2996414-2996480)
chr6 (5-44)||(2980098-2980137)
chr6 (5-40)||(2983974-2984009)
[»] chr4 (1 HSPs)
chr4 (5-46)||(38885789-38885830)


Alignment Details
Target: chr6 (Bit Score: 62; Significance: 4e-27; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 4e-27
Query Start/End: Original strand, 72 - 149
Target Start/End: Complemental strand, 2996386 - 2996309
Alignment:
Q  72 ggttggtggtggtagttttttggagttttcaagaaggcgtctctttatgaaatctttcatctccttttgccttggtgg 149  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||    
T  2996386 ggttggtggtggtagttttttagagttttcaagaaggcgtctctttatggaatctttcgtctccttttgcctttgtgg 2996309  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 2996480 - 2996414
Alignment:
Q  5 taggctcataagcaaaaccatgcaactcaaacccatcataacaaaaatatagtgcagctgcgtgtat 71  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||| || | ||||  |||||||||    
T  2996480 taggctcataagcaagaccatgcaactcaaacccatcataaccaaagtagaatgcaagtgcgtgtat 2996414  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 2980098 - 2980137
Alignment:
Q  5 taggctcataagcaaaaccatgcaactcaaacccatcata 44  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  2980098 taggttcataagcaaaaccatgcaactcaaacccatcata 2980137  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 40
Target Start/End: Original strand, 2983974 - 2984009
Alignment:
Q  5 taggctcataagcaaaaccatgcaactcaaacccat 40  Q
    ||||||||||||||||| ||||||||||||||||||    
T  2983974 taggctcataagcaaaatcatgcaactcaaacccat 2984009  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 38885789 - 38885830
Alignment:
Q  5 taggctcataagcaaaaccatgcaactcaaacccatcataac 46  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  38885789 taggctcataagcaaaaccatgcaactcaaacccatcataac 38885830  T

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