View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5876-11 (Length: 149)
Name: Solexa-NF5876-11
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5876-11 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 130; Significance: 1e-67; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 12 - 149
Target Start/End: Complemental strand, 31642489 - 31642352
Alignment:
| Q |
12 |
ggagagattgacattgatcagagggctactattcaaactcctcacatttcgtaaaacaatacacgattctgaaagtgtactttcagacaacataatttgt |
111 |
Q |
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| T |
31642489 |
ggagagattgacattgatcagagggctactattcaaactcctcacattttgtaaaacaatacacgattctgaaagtgtactttcagacaacataatttgt |
31642390 |
T |
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| Q |
112 |
tcataagtatacttatagagtgaagaaagtttctccct |
149 |
Q |
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| T |
31642389 |
tcataagtatacttatagagtggagaaagtttctccct |
31642352 |
T |
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Target: chr6 (Bit Score: 28; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 79 - 114
Target Start/End: Original strand, 299523 - 299558
Alignment:
| Q |
79 |
tctgaaagtgtactttcagacaacataatttgttca |
114 |
Q |
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|||| |||||||||||| |||||||||||||||||| |
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| T |
299523 |
tctggaagtgtactttcggacaacataatttgttca |
299558 |
T |
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