View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5876-15 (Length: 144)

Name: Solexa-NF5876-15
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5876-15
Solexa-NF5876-15
[»] chr3 (12 HSPs)
chr3 (1-144)||(8457901-8458045)
chr3 (1-139)||(51951940-51952079)
chr3 (1-143)||(43018347-43018490)
chr3 (3-144)||(55218637-55218779)
chr3 (45-144)||(7622685-7622783)
chr3 (9-144)||(26400188-26400324)
chr3 (9-144)||(51191863-51191999)
chr3 (37-144)||(21689777-21689885)
chr3 (1-144)||(39383456-39383600)
chr3 (3-109)||(39133664-39133771)
chr3 (1-142)||(13444122-13444265)
chr3 (55-144)||(19396816-19396905)
[»] scaffold0200 (1 HSPs)
scaffold0200 (1-144)||(26929-27073)
[»] chr6 (10 HSPs)
chr6 (1-144)||(7608482-7608626)
chr6 (1-144)||(7435607-7435751)
chr6 (3-144)||(32957444-32957586)
chr6 (1-144)||(7597564-7597708)
chr6 (58-144)||(12523652-12523738)
chr6 (1-144)||(13406122-13406266)
chr6 (23-133)||(34183123-34183234)
chr6 (1-137)||(31797974-31798111)
chr6 (3-134)||(6192549-6192681)
chr6 (57-127)||(29025244-29025314)
[»] chr4 (19 HSPs)
chr4 (9-144)||(26006076-26006212)
chr4 (3-144)||(26429183-26429325)
chr4 (3-144)||(35853165-35853307)
chr4 (1-144)||(17423813-17423957)
chr4 (1-144)||(33846312-33846456)
chr4 (1-144)||(52759118-52759262)
chr4 (1-144)||(48446650-48446794)
chr4 (1-139)||(8169321-8169459)
chr4 (45-144)||(9034934-9035033)
chr4 (1-137)||(22359239-22359376)
chr4 (1-144)||(2536970-2537114)
chr4 (1-136)||(19396165-19396301)
chr4 (9-144)||(25058295-25058431)
chr4 (1-144)||(12274184-12274328)
chr4 (1-144)||(54552609-54552753)
chr4 (58-144)||(791986-792071)
chr4 (54-123)||(6839759-6839828)
chr4 (54-121)||(28031562-28031629)
chr4 (64-104)||(23860023-23860063)
[»] chr7 (20 HSPs)
chr7 (3-144)||(23362295-23362437)
chr7 (1-144)||(9360746-9360890)
chr7 (3-144)||(14160470-14160612)
chr7 (3-144)||(25611354-25611496)
chr7 (4-139)||(4595026-4595162)
chr7 (1-144)||(5866221-5866365)
chr7 (1-144)||(8150846-8150990)
chr7 (3-144)||(3962285-3962427)
chr7 (3-144)||(30466674-30466818)
chr7 (52-144)||(40187415-40187507)
chr7 (22-144)||(6596171-6596294)
chr7 (1-144)||(42851969-42852116)
chr7 (9-144)||(9026576-9026709)
chr7 (1-144)||(21946915-21947052)
chr7 (3-104)||(28423910-28424012)
chr7 (9-137)||(35827579-35827708)
chr7 (54-144)||(2405229-2405319)
chr7 (94-144)||(12152783-12152833)
chr7 (9-86)||(24267771-24267849)
chr7 (54-123)||(25506028-25506097)
[»] chr8 (14 HSPs)
chr8 (9-139)||(5839777-5839908)
chr8 (3-137)||(11503067-11503202)
chr8 (3-144)||(25663511-25663653)
chr8 (1-137)||(32282841-32282978)
chr8 (1-144)||(36531140-36531284)
chr8 (1-144)||(40395243-40395385)
chr8 (44-144)||(32578099-32578199)
chr8 (54-142)||(14219789-14219877)
chr8 (9-144)||(10342374-10342514)
chr8 (54-131)||(28570739-28570816)
chr8 (54-131)||(28578332-28578409)
chr8 (76-123)||(31037712-31037759)
chr8 (82-123)||(43234217-43234258)
chr8 (9-44)||(30273686-30273721)
[»] chr1 (9 HSPs)
chr1 (1-144)||(48522168-48522312)
chr1 (58-144)||(25070817-25070903)
chr1 (54-144)||(15393494-15393584)
chr1 (4-144)||(26347349-26347490)
chr1 (68-144)||(19956605-19956681)
chr1 (54-123)||(20621463-20621532)
chr1 (9-131)||(31592321-31592444)
chr1 (70-123)||(11080015-11080068)
chr1 (55-112)||(25698649-25698706)
[»] scaffold0016 (1 HSPs)
scaffold0016 (3-144)||(187132-187274)
[»] chr5 (11 HSPs)
chr5 (3-144)||(30796789-30796931)
chr5 (9-133)||(1721983-1722108)
chr5 (1-144)||(39860930-39861074)
chr5 (3-144)||(29242099-29242241)
chr5 (49-144)||(36978760-36978855)
chr5 (3-144)||(9609493-9609635)
chr5 (58-144)||(4052904-4052990)
chr5 (83-144)||(16007123-16007184)
chr5 (57-111)||(27452519-27452573)
chr5 (100-144)||(40109287-40109331)
chr5 (103-144)||(27452474-27452515)
[»] chr2 (18 HSPs)
chr2 (1-126)||(10213822-10213948)
chr2 (4-144)||(38451684-38451824)
chr2 (1-144)||(24477467-24477611)
chr2 (1-139)||(45085981-45086120)
chr2 (1-144)||(23407740-23407884)
chr2 (1-144)||(23769766-23769910)
chr2 (9-144)||(22605930-22606066)
chr2 (9-100)||(40074065-40074156)
chr2 (53-144)||(11616688-11616779)
chr2 (13-144)||(32025536-32025667)
chr2 (21-138)||(31411362-31411480)
chr2 (75-144)||(20214282-20214351)
chr2 (22-144)||(1604881-1605003)
chr2 (54-144)||(28317810-28317899)
chr2 (9-136)||(27177736-27177864)
chr2 (103-144)||(1605079-1605120)
chr2 (74-107)||(2599233-2599266)
chr2 (9-144)||(16349452-16349588)
[»] scaffold0577 (1 HSPs)
scaffold0577 (3-144)||(2190-2332)
[»] scaffold0279 (1 HSPs)
scaffold0279 (3-144)||(6719-6861)
[»] scaffold0011 (1 HSPs)
scaffold0011 (1-144)||(58404-58548)
[»] scaffold0450 (1 HSPs)
scaffold0450 (3-136)||(5297-5431)
[»] scaffold0201 (1 HSPs)
scaffold0201 (69-144)||(20703-20778)
[»] scaffold0004 (1 HSPs)
scaffold0004 (1-110)||(216466-216576)
[»] scaffold0360 (1 HSPs)
scaffold0360 (52-127)||(5320-5395)
[»] scaffold0007 (1 HSPs)
scaffold0007 (82-118)||(146612-146648)


Alignment Details
Target: chr3 (Bit Score: 105; Significance: 8e-53; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 8e-53
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 8457901 - 8458045
Alignment:
Q  1 ttattcgaagacaagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctc 99  Q
    ||||||||||||||||||||||||||||| ||||  |||||| | |||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  8457901 ttattcgaagacaagccaatgaagtcgcttatagctttgctataatggctttgcgtcatgctagttttcatattcatattaggatttcatcttgtatctc 8458000  T
Q  100 tactattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||    
T  8458001 tactattattatgaatgaaatgcaataagtttcttcttgtaaaaa 8458045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 2e-47
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 51951940 - 51952079
Alignment:
Q  1 ttattcgaagacaagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctc 99  Q
    ||||||||||||||||||||||| ||||||||||| |||||||| ||||||  ||||||||||||||||||||||||||||| ||| |||||||||||||    
T  51951940 ttattcgaagacaagccaatgaattcgctcatagttttgctagagtggctttacgtcatgctagttttcatattcatattaggattccatcttgtatctc 51952039  T
Q  100 tactattattataaatgaaatgcaataaatttcttcttgt 139  Q
    |||||||||||| ||||||||||||||| |||||| ||||    
T  51952040 tactattattatgaatgaaatgcaataagtttctttttgt 51952079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 3e-40
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 43018490 - 43018347
Alignment:
Q  1 ttattcgaagacaagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctc 99  Q
    ||||||| |||||||||||  |||| ||||||||| |||||| | ||| || ||||||||||||||| |||||||||||||  ||| |||||||||||||    
T  43018490 ttattcggagacaagccaacaaagttgctcatagttttgctatagtggttttgcgtcatgctagtttccatattcatattatgattccatcttgtatctc 43018391  T
Q  100 tactattattataaatgaaatgcaataaatttcttcttgtaaaa 143  Q
    |||||||||||| |||||||||||||||||||||||||||||||    
T  43018390 tactattattatgaatgaaatgcaataaatttcttcttgtaaaa 43018347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 3 - 144
Target Start/End: Complemental strand, 55218779 - 55218637
Alignment:
Q  3 attcgaagacaagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctcta 101  Q
    ||||| ||||||||||| ||||||||||||||  |||||||| |||||| ||||||||||||||| |||||||||||||| ||| ||||||||| |||||    
T  55218779 attcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagtttccatattcatattaggattccatcttgtacctcta 55218680  T
Q  102 ctattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    ||||||| |||||||||||||||||| |||||| |||| ||||    
T  55218679 ctattatcataaatgaaatgcaataagtttctttttgtcaaaa 55218637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 80; E-Value: 7e-38
Query Start/End: Original strand, 45 - 144
Target Start/End: Original strand, 7622685 - 7622783
Alignment:
Q  45 tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctctactattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||    
T  7622685 tggcttcgcgt-atgctagttttcatattcatattaggatttcatcttgtatctctactattattataaatgaaatgcaataaatttttttttgtaaaaa 7622783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 77; E-Value: 4e-36
Query Start/End: Original strand, 9 - 144
Target Start/End: Original strand, 26400188 - 26400324
Alignment:
Q  9 agacaagccaatgaagtcgctcatagtcttgctag-atggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctctactatta 107  Q
    |||||||||||  |||||||||||||| ||||||| |  | |||||||||||||||||| |||||||||||||  ||| ||| |||||||||||||||||    
T  26400188 agacaagccaacaaagtcgctcatagttttgctaggaaagtttcgcgtcatgctagtttccatattcatattatgattccatattgtatctctactatta 26400287  T
Q  108 ttataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  26400288 ttatgaatgaaatgcaataagtttcttcttgtaaaaa 26400324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 77; E-Value: 4e-36
Query Start/End: Original strand, 9 - 144
Target Start/End: Complemental strand, 51191999 - 51191863
Alignment:
Q  9 agacaagccaatgaagtcgctcatagtcttgctagatgg-cttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctctactatta 107  Q
    ||||||||||| ||||||| ||||||  ||||||||| | ||| ||||||||||||||| |||||||||||||  |||||||||||||||| ||||||||    
T  51191999 agacaagccaacgaagtcgttcatagctttgctagattgactttgcgtcatgctagtttccatattcatattatgatttcatcttgtatctgtactatta 51191900  T
Q  108 ttataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    |||| ||||||||||||||| ||||||||||| ||||    
T  51191899 ttatgaatgaaatgcaataagtttcttcttgtcaaaa 51191863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 37 - 144
Target Start/End: Original strand, 21689777 - 21689885
Alignment:
Q  37 ttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctctactattattataaatgaaatgcaataaatttcttc 135  Q
    |||||||| |||||| |||||||| |||||| |||||||||||||  ||||||||||||||||||||||||||||| |||||||| |||||| || ||||    
T  21689777 ttgctagagtggctttgcgtcatgttagtttccatattcatattatgatttcatcttgtatctctactattattatgaatgaaatacaataagttacttc 21689876  T
Q  136 ttgtaaaaa 144  Q
     ||||||||    
T  21689877 ctgtaaaaa 21689885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 39383456 - 39383600
Alignment:
Q  1 ttattcgaagacaagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctc 99  Q
    ||||||| ||||||| ||| ||||||| ||||||  ||||| || ||| || |||||||| || ||| |||||||||||||  ||| ||| |||||||||    
T  39383456 ttattcggagacaagtcaacgaagtcgttcatagctttgctcgagtggttttgcgtcatgttaatttccatattcatattatgattccattttgtatctc 39383555  T
Q  100 tactattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    |||||||||||| ||||||||||||||| ||||||||||| ||||    
T  39383556 tactattattatgaatgaaatgcaataagtttcttcttgtcaaaa 39383600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 60; E-Value: 6e-26
Query Start/End: Original strand, 3 - 109
Target Start/End: Original strand, 39133664 - 39133771
Alignment:
Q  3 attcgaagacaagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctcta 101  Q
    ||||| ||||||||||| ||||||||||||||  |||||||| || ||| ||||||||||||||| |||||||||||||| |||  ||||||||||||||    
T  39133664 attcggagacaagccaacgaagtcgctcatagctttgctagagtgactttgcgtcatgctagtttccatattcatattaggattcaatcttgtatctcta 39133763  T
Q  102 ctattatt 109  Q
    ||||||||    
T  39133764 ctattatt 39133771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 13444122 - 13444265
Alignment:
Q  1 ttattcgaagacaagccaatgaagtcgctcatagtcttgctagat-ggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatct- 98  Q
    ||||||| ||||||| ||| ||||||||||||||  || || | | |||||| |||||| ||||||| |||||||||||||| ||| |||||| |||||     
T  13444122 ttattcggagacaagtcaacgaagtcgctcatagctttcctcggttggcttcacgtcattctagtttccatattcatattaggattccatcttttatctc 13444221  T
Q  99 ctactattattataaatgaaatgcaataaatttcttcttgtaaa 142  Q
    ||||||| ||||| |||||||| |||||| ||||||||||||||    
T  13444222 ctactatcattatgaatgaaatacaataagtttcttcttgtaaa 13444265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 55 - 144
Target Start/End: Original strand, 19396816 - 19396905
Alignment:
Q  55 tcatgctagttttcatattcatattagaatttcatcttgtatctctactattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    |||||||||||| | || |  |||| ||||| ||||||||||||| || |||||||| |||| |||||| |||||||  |||||| ||||    
T  19396816 tcatgctagtttccgtacttttattcgaattccatcttgtatctcaacaattattatgaatgtaatgcactaaatttactcttgtcaaaa 19396905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 101; Significance: 2e-50; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 101; E-Value: 2e-50
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 27073 - 26929
Alignment:
Q  1 ttattcgaagacaagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctc 99  Q
    ||||||| ||||||||||| ||||||||||||||  |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27073 ttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagttttcatattcatattagaatttcatcttgtatctc 26974  T
Q  100 tactattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    | |||||||||| ||||||||||||||| ||| ||||||||||||    
T  26973 tgctattattatgaatgaaatgcaataagttttttcttgtaaaaa 26929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 5e-48; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 5e-48
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 7608482 - 7608626
Alignment:
Q  1 ttattcgaagacaagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctc 99  Q
    ||||||||||||||||||| |||||| |||||||  |||||| | |||||| ||||||||||||||| ||||||||||||| |||| |||||||||||||    
T  7608482 ttattcgaagacaagccaacgaagtcactcatagctttgctatagtggctttgcgtcatgctagtttccatattcatattataattccatcttgtatctc 7608581  T
Q  100 tactattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  7608582 tactattattatgaatgaaatgcaataaatttcttcttgtaaaaa 7608626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 3e-43
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 7435751 - 7435607
Alignment:
Q  1 ttattcgaagacaagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctc 99  Q
    ||||||| ||||||| ||| ||||||||| ||||  |||||||| |||||| ||||||||||||||| |||||||||||||| ||| |||||||||||||    
T  7435751 ttattcggagacaagtcaacgaagtcgctaatagctttgctagagtggctttgcgtcatgctagtttccatattcatattaggattccatcttgtatctc 7435652  T
Q  100 tactattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    |||||||||||| || |||||||||||||||||||||||||||||    
T  7435651 tactattattatgaacgaaatgcaataaatttcttcttgtaaaaa 7435607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 3 - 144
Target Start/End: Original strand, 32957444 - 32957586
Alignment:
Q  3 attcgaagacaagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctcta 101  Q
    ||||| ||||||||||| ||||||||||||||  |||||||| |||||| ||||||||||||||| |||||||||||||| ||| |||||||||||||||    
T  32957444 attcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagtttccatattcatattaggattccatcttgtatctcta 32957543  T
Q  102 ctattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    |||||||| | |||||||||| |||| ||||||||||| ||||    
T  32957544 ctattattttgaatgaaatgcgataagtttcttcttgtcaaaa 32957586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 7597564 - 7597708
Alignment:
Q  1 ttattcgaagacaagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctc 99  Q
    ||||||| ||||||||||   |||||||||||||  |||||||| |||||| |||| ||||||||||||||||||||||||| ||| |||||| ||||||    
T  7597564 ttattcggagacaagccaccaaagtcgctcatagctttgctagagtggctttgcgtgatgctagttttcatattcatattaggattccatcttatatctc 7597663  T
Q  100 tactattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    |||| ||||||| ||||||| ||||||||||||||||||||||||    
T  7597664 tactcttattatgaatgaaaagcaataaatttcttcttgtaaaaa 7597708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 58 - 144
Target Start/End: Original strand, 12523652 - 12523738
Alignment:
Q  58 tgctagttttcatattcatattagaatttcatcttgtatctctactattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    ||||||||| |||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  12523652 tgctagtttccatattcatattaggatttcatcttgtatctctaccattattatgaatgaaatgcaataaatttcttcttgtaaaaa 12523738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 6e-29
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 13406122 - 13406266
Alignment:
Q  1 ttattcgaagacaagccaatgaagtcgctcatagtcttgctag-atggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctc 99  Q
    ||||||| |||||||||||| ||||| |||||||| ||||||| ||| ||||| ||||||||||||| |||| ||||||||  |||  ||| ||||||||    
T  13406122 ttattcggagacaagccaattaagtcactcatagttttgctaggatgacttcgagtcatgctagtttccataatcatattaagattcgatcgtgtatctc 13406221  T
Q  100 tactattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    |||| ||||| |||||||||| ||||||  |||||||||||||||    
T  13406222 tactcttattttaaatgaaatacaataagcttcttcttgtaaaaa 13406266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 6e-26
Query Start/End: Original strand, 23 - 133
Target Start/End: Complemental strand, 34183234 - 34183123
Alignment:
Q  23 agtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctctactattattataaatgaaatg 121  Q
    ||||||||||||  |||||||| |||||| |||||||| ||||||||||||| ||||| | |||||||||||||||||||||| |||||| ||| |||||    
T  34183234 agtcgctcatagctttgctagagtggctttgcgtcatgttagttttcatatttatattgggatttcatcttgtatctctactactattatgaattaaatg 34183135  T
Q  122 caataaatttct 133  Q
    |||||| |||||    
T  34183134 caataagtttct 34183123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 31798111 - 31797974
Alignment:
Q  1 ttattcgaagacaagccaatgaagtcgctcatagtcttgcta-gatggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctc 99  Q
    ||||| |||||||||| || |||||  ||||||   |||||| || |||||| | |||| |||||||||||||  ||||||| |||||||||||||||||    
T  31798111 ttatttgaagacaagctaacgaagttactcataaatttgctatgacggcttcacatcattctagttttcatatctatattaggatttcatcttgtatctc 31798012  T
Q  100 tactattattataaatgaaatgcaataaatttcttctt 137  Q
    | |||||||||| ||| ||||||||||||||| |||||    
T  31798011 tgctattattatgaataaaatgcaataaatttattctt 31797974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 9e-22
Query Start/End: Original strand, 3 - 134
Target Start/End: Original strand, 6192549 - 6192681
Alignment:
Q  3 attcgaagacaagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctcta 101  Q
    ||||| ||||||||||| ||| || ||||||   |||||||| |||||   ||| |||||||||| |||||||||||||| ||| |||||||||| ||||    
T  6192549 attcggagacaagccaacgaaatcactcatatctttgctagagtggctctacgttatgctagtttccatattcatattaggattccatcttgtatttcta 6192648  T
Q  102 ctattattataaatgaaatgcaataaatttctt 134  Q
    ||||||| || ||||||||||||||| ||||||    
T  6192649 ctattatcatgaatgaaatgcaataagtttctt 6192681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 57 - 127
Target Start/End: Complemental strand, 29025314 - 29025244
Alignment:
Q  57 atgctagttttcatattcatattagaatttcatcttgtatctctactattattataaatgaaatgcaataa 127  Q
    ||||||| || ||||||| |||||  ||||||||||||||| ||||||||||||| |||||||||||||||    
T  29025314 atgctaggttccatattcgtattaagatttcatcttgtatcactactattattatgaatgaaatgcaataa 29025244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 1e-45; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 1e-45
Query Start/End: Original strand, 9 - 144
Target Start/End: Complemental strand, 26006212 - 26006076
Alignment:
Q  9 agacaagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctctactatta 107  Q
    ||||||||||| ||||||||||||||| ||||| || |||||| ||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||    
T  26006212 agacaagccaacgaagtcgctcatagttttgcttgagtggctttgcgtcatgctagtttccatattcatattaggattccatcttgtatctctactatta 26006113  T
Q  108 ttataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  26006112 ttatgaatgaaatgcaataagtttcttcttgtaaaaa 26006076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 3 - 144
Target Start/End: Complemental strand, 26429325 - 26429183
Alignment:
Q  3 attcgaagacaagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctcta 101  Q
    ||||| |||||||||||  |||||||||||||  |||||||| |||||| ||||||||||||||| |||||||||||||| ||| |||||||||||||||    
T  26429325 attcggagacaagccaacaaagtcgctcatagctttgctagagtggctttgcgtcatgctagtttccatattcatattaggattccatcttgtatctcta 26429226  T
Q  102 ctattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    |||||||| | ||||||||||||||| ||||||||||| ||||    
T  26429225 ctattattttgaatgaaatgcaataagtttcttcttgtcaaaa 26429183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 3 - 144
Target Start/End: Original strand, 35853165 - 35853307
Alignment:
Q  3 attcgaagacaagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctcta 101  Q
    ||||| ||||||| ||| ||||||||||||||| |||||||| |||||| ||||||||||||||| |||||||||||||| ||| |||||||||||||||    
T  35853165 attcggagacaagtcaacgaagtcgctcatagttttgctagagtggctttgcgtcatgctagtttccatattcatattaggattccatcttgtatctcta 35853264  T
Q  102 ctattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    |||||||| | ||| ||||||||||| ||||||||||| ||||    
T  35853265 ctattattttgaattaaatgcaataagtttcttcttgtcaaaa 35853307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 17423957 - 17423813
Alignment:
Q  1 ttattcgaagacaagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctc 99  Q
    ||||||| ||||||||||| ||||| ||||||||  |||||||| |||||||| ||||||||||||| |||||||||||||| ||| |||||||||||||    
T  17423957 ttattcggagacaagccaacgaagttgctcatagctttgctagagtggcttcgagtcatgctagtttccatattcatattaggattccatcttgtatctc 17423858  T
Q  100 tactattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    ||||||||| || |||||||| |||||| ||||||||||| ||||    
T  17423857 tactattatcatgaatgaaattcaataagtttcttcttgtcaaaa 17423813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 33846312 - 33846456
Alignment:
Q  1 ttattcgaagacaagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctc 99  Q
    ||||||| ||||||||||| ||||||||||||||  |||||||| |||||| ||||||||||||||| |||||||| ||||| ||| |||||||||| ||    
T  33846312 ttattcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagtttccatattcacattaggattccatcttgtatttc 33846411  T
Q  100 tactattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    |||||||||| | ||||||||||||||| ||||||||| ||||||    
T  33846412 tactattattctgaatgaaatgcaataagtttcttcttataaaaa 33846456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 52759262 - 52759118
Alignment:
Q  1 ttattcgaagacaagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctc 99  Q
    ||||||| ||||||||||| ||||||||||||||| ||| |||| |||||| | ||||||||||||| |||||||||||||  ||| |||| |||||||     
T  52759262 ttattcggagacaagccaacgaagtcgctcatagttttgttagagtggctttgtgtcatgctagtttccatattcatattatgattccatcgtgtatcta 52759163  T
Q  100 tactattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||    
T  52759162 tactattattatgaatgaaatgcaataagtttcttcttgtaaaaa 52759118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 77; E-Value: 4e-36
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 48446650 - 48446794
Alignment:
Q  1 ttattcgaagacaagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctc 99  Q
    ||||||| ||||||||||| ||||| ||||||||  |||||||| || ||| ||||||||||||||| |||||||||||||   || |||||| ||||||    
T  48446650 ttattcggagacaagccaacgaagttgctcatagctttgctagagtgactttgcgtcatgctagtttccatattcatattatggttccatcttatatctc 48446749  T
Q  100 tactattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    |||||||||||| |||||||| |||||||||||||||||||||||    
T  48446750 tactattattatgaatgaaatacaataaatttcttcttgtaaaaa 48446794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 8169459 - 8169321
Alignment:
Q  1 ttattcgaagacaagccaatgaagtcgctcatagtcttgctag-atggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctc 99  Q
    ||||||| ||||||||||| ||||||||||||||  ||||||| |||||||||||||||||||||||   |||||||||||||||| || ||| ||||||    
T  8169459 ttattcggagacaagccaacgaagtcgctcatagctttgctaggatggcttcgcgtcatgctagtttcattattcatattagaattccaccttatatctc 8169360  T
Q  100 tactattattataaatgaaatgcaataaatttcttcttgt 139  Q
    |||||||||||| |||| |||||||||| |||||||||||    
T  8169359 tactattattatgaatg-aatgcaataagtttcttcttgt 8169321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 72; E-Value: 4e-33
Query Start/End: Original strand, 45 - 144
Target Start/End: Original strand, 9034934 - 9035033
Alignment:
Q  45 tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctctactattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    |||||| ||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||    
T  9034934 tggctttgcgtcatgctagtttccatattcatattaggattccatcttgtatctctactattattatgaatgaaatgcaataagtttcttctcgtaaaaa 9035033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 70; E-Value: 6e-32
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 22359376 - 22359239
Alignment:
Q  1 ttattcgaagacaagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctc 99  Q
    ||||||||| ||||||||| |||||| |||||||| |||||  | |||||| | ||||||||||||| |||||||||||||  ||| |||||||||||||    
T  22359376 ttattcgaatacaagccaacgaagtcactcatagttttgctttagtggctttgtgtcatgctagtttccatattcatattaagattccatcttgtatctc 22359277  T
Q  100 tactattattataaatgaaatgcaataaatttcttctt 137  Q
    |||||||||||| ||||||||||||||| ||| |||||    
T  22359276 tactattattatgaatgaaatgcaataagtttgttctt 22359239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 2537114 - 2536970
Alignment:
Q  1 ttattcgaagacaagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctc 99  Q
    ||||||| ||||||||||| |||||| || |||   |||||||| || ||| ||||||||||||||| ||||||||| |||| ||| |||||||||||||    
T  2537114 ttattcggagacaagccaacgaagtctcttataactttgctagagtgactttgcgtcatgctagtttccatattcatgttaggattccatcttgtatctc 2537015  T
Q  100 tactattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    |||||||||||| ||| ||||||||||| ||||||||||| ||||    
T  2537014 tactattattatgaataaaatgcaataagtttcttcttgtcaaaa 2536970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 19396301 - 19396165
Alignment:
Q  1 ttattcgaagacaagccaatgaagtcgctcatagtcttgcta-gatggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctc 99  Q
    ||||||| |||||||||||| |||||||| ||||| |||||| | |||||| ||||||| |||||||||| ||||||||||  |||  ||||||||||||    
T  19396301 ttattcggagacaagccaataaagtcgcttatagttttgctatggtggctttgcgtcatactagttttcacattcatattaagattgtatcttgtatctc 19396202  T
Q  100 tactattattataaatgaaatgcaataaatttcttct 136  Q
    |||||||||||| ||||||||||||||| ||| ||||    
T  19396201 tactattattatgaatgaaatgcaataagttttttct 19396165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 9 - 144
Target Start/End: Complemental strand, 25058431 - 25058295
Alignment:
Q  9 agacaagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctctactatta 107  Q
    ||||||||||| ||||||||||||||| ||| |||| ||||||||||||||| |||||| |||||||||||||  |||  ||||||||||||||||||||    
T  25058431 agacaagccaacgaagtcgctcatagttttgttagactggcttcgcgtcatgttagtttccatattcatattaagattcaatcttgtatctctactatta 25058332  T
Q  108 ttataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    |||| ||| ||||  | ||| ||||||||||||||||    
T  25058331 ttatgaataaaatatagtaagtttcttcttgtaaaaa 25058295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 12274184 - 12274328
Alignment:
Q  1 ttattcgaagacaagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctc 99  Q
    ||||||| ||| ||||||| |||||||||| |||  |||||||| |  ||| | |||||| ||||||  ||||| ||||||| ||| |||||||||||||    
T  12274184 ttattcggagataagccaacgaagtcgctcttagctttgctagagtaactttgtgtcatgttagtttctatatttatattaggattccatcttgtatctc 12274283  T
Q  100 tactattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    |||||||||||| ||||||||||||||| ||| ||||||||||||    
T  12274284 tactattattatgaatgaaatgcaataagttttttcttgtaaaaa 12274328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 54552609 - 54552753
Alignment:
Q  1 ttattcgaagacaagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctc 99  Q
    ||||||| | |||||| || ||||||| ||||||  |||||||| |||||| |||||||||||| |||||||||||||| || ||| | ||||||||||     
T  54552609 ttattcggatacaagctaacgaagtcggtcatagctttgctagagtggctttgcgtcatgctagatttcatattcatatcaggattccttcttgtatctt 54552708  T
Q  100 tactattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    | |||||||||| ||||||||||||||| ||| || |||||||||    
T  54552709 tgctattattatgaatgaaatgcaataagttttttgttgtaaaaa 54552753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 58 - 144
Target Start/End: Original strand, 791986 - 792071
Alignment:
Q  58 tgctagttttcatattcatattagaatttcatcttgtatctctactattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    ||||||||| |||||||||||||| ||| |||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  791986 tgctagtttccatattcatattaggattccatcttatatctctac-attattatgaatgaaatgcaataaatttcttcttgtaaaaa 792071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 6839828 - 6839759
Alignment:
Q  54 gtcatgctagttttcatattcatattagaatttcatcttgtatctctactattattataaatgaaatgca 123  Q
    ||||||||||||| || |||  |||||||||| |||||| ||||||||| |||||||| ||| |||||||    
T  6839828 gtcatgctagtttccacatttttattagaattccatcttttatctctacgattattatgaataaaatgca 6839759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 54 - 121
Target Start/End: Original strand, 28031562 - 28031629
Alignment:
Q  54 gtcatgctagttttcatattcatattagaatttcatcttgtatctctactattattataaatgaaatg 121  Q
    ||||||||||||||| ||||   |||  |||||||||||||||||||||| ||||| ||||| |||||    
T  28031562 gtcatgctagttttcgtattttcattcaaatttcatcttgtatctctacttttattttaaataaaatg 28031629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 104
Target Start/End: Complemental strand, 23860063 - 23860023
Alignment:
Q  64 ttttcatattcatattagaatttcatcttgtatctctacta 104  Q
    |||||||||||||||||  ||||||||| ||||||||||||    
T  23860063 ttttcatattcatattacgatttcatctcgtatctctacta 23860023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 2e-44; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 2e-44
Query Start/End: Original strand, 3 - 144
Target Start/End: Original strand, 23362295 - 23362437
Alignment:
Q  3 attcgaagacaagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctcta 101  Q
    ||||| |||||||||||  |||||||||||||  |||||||| |||||| ||||||||||||||| |||||||||||||| ||| |||||||||||||||    
T  23362295 attcggagacaagccaacaaagtcgctcatagctttgctagagtggctttgcgtcatgctagtttccatattcatattaggattccatcttgtatctcta 23362394  T
Q  102 ctattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    |||||||| | ||||||||||||||||||||||||||||||||    
T  23362395 ctattattttgaatgaaatgcaataaatttcttcttgtaaaaa 23362437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 7e-41
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 9360746 - 9360890
Alignment:
Q  1 ttattcgaagacaagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctc 99  Q
    ||||||| ||||||||||| ||||||| ||||||| |||||||| | | || ||||||||||||||| |||||||||||||| ||| |||||||||||||    
T  9360746 ttattcggagacaagccaacgaagtcgatcatagttttgctagagtagttttgcgtcatgctagtttccatattcatattaggattccatcttgtatctc 9360845  T
Q  100 tactattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    |||||||||||| |||||||| |||||| ||||||||||||||||    
T  9360846 tactattattatgaatgaaatacaataagtttcttcttgtaaaaa 9360890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 3 - 144
Target Start/End: Original strand, 14160470 - 14160612
Alignment:
Q  3 attcgaagacaagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctcta 101  Q
    ||||| ||||||||||| ||||||||||||||  |||||||| |||||| ||||||||||||||| | |||||||||||| ||| | |||||||||||||    
T  14160470 attcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagtttgcgtattcatattaggattccttcttgtatctcta 14160569  T
Q  102 ctattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    |||||||| | ||||||||||||||| ||||||||||| ||||    
T  14160570 ctattattttgaatgaaatgcaataagtttcttcttgtcaaaa 14160612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 3 - 144
Target Start/End: Complemental strand, 25611496 - 25611354
Alignment:
Q  3 attcgaagacaagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctcta 101  Q
    ||||| ||||||||||| ||||||||||||||  |||||||| |||||| ||||||||||||||| |||||||||||||| ||| |||||||||||||||    
T  25611496 attcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagtttccatattcatattaggattccatcttgtatctcta 25611397  T
Q  102 ctattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    |||||||| | ||||||||||||||| ||| || |||| ||||    
T  25611396 ctattattttgaatgaaatgcaataagtttatttttgtcaaaa 25611354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 77; E-Value: 4e-36
Query Start/End: Original strand, 4 - 139
Target Start/End: Complemental strand, 4595162 - 4595026
Alignment:
Q  4 ttcgaagacaagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctctac 102  Q
    |||| |||||| |||| ||||||||||||||| |||||||| ||| ||   ||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  4595162 ttcggagacaaaccaacgaagtcgctcatagttttgctagagtggttttctgtcatgctagtttccatattcatattaggatttcatcttgtatctctac 4595063  T
Q  103 tattattataaatgaaatgcaataaatttcttcttgt 139  Q
    ||||||||| ||||||||||||||| ||| |||||||    
T  4595062 tattattatgaatgaaatgcaataagtttattcttgt 4595026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 77; E-Value: 4e-36
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 5866221 - 5866365
Alignment:
Q  1 ttattcgaagacaagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctc 99  Q
    ||||||| |||||||| ||  || | ||||||||  || ||||| |||||||| |||||| || ||| |||||||||||||| |||||||||||||||||    
T  5866221 ttattcggagacaagcaaacaaaattgctcatagctttcctagagtggcttcgtgtcatgttaatttccatattcatattaggatttcatcttgtatctc 5866320  T
Q  100 tactattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  5866321 tactattattatgaatgaaatgcaataaatttcttcttgtaaaaa 5866365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 77; E-Value: 4e-36
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 8150990 - 8150846
Alignment:
Q  1 ttattcgaagacaagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctc 99  Q
    ||||||| |||||||| || ||||||||||||||| |||||||  || ||| ||||||| ||||||| || ||||||||||| ||| |||||||||||||    
T  8150990 ttattcggagacaagcaaacgaagtcgctcatagttttgctagcgtgactttgcgtcatactagtttccaaattcatattaggattccatcttgtatctc 8150891  T
Q  100 tactattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    |||||||||||| ||||||||| ||||| ||||||||||||||||    
T  8150890 tactattattatgaatgaaatgtaataagtttcttcttgtaaaaa 8150846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 75; E-Value: 6e-35
Query Start/End: Original strand, 3 - 144
Target Start/End: Complemental strand, 3962427 - 3962285
Alignment:
Q  3 attcgaagacaagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctcta 101  Q
    ||||| ||||||||||| ||||| ||||||||  |||||||| |||||| ||||||||||||||| ||||||| |||||| ||| |||||||||||||||    
T  3962427 attcggagacaagccaacgaagttgctcatagctttgctagagtggctttgcgtcatgctagtttccatattcgtattaggattccatcttgtatctcta 3962328  T
Q  102 ctattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    |||||||| | |||||||||||||||  |||||||| ||||||    
T  3962327 ctattattttgaatgaaatgcaataagcttcttcttataaaaa 3962285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 74; E-Value: 3e-34
Query Start/End: Original strand, 3 - 144
Target Start/End: Original strand, 30466674 - 30466818
Alignment:
Q  3 attcgaagacaagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctcta 101  Q
    ||||| ||||||||||| ||||||||||||||| |||||||| |||||| |||| |||||||||| |||||||||||||| ||| |||||||||||||||    
T  30466674 attcggagacaagccaacgaagtcgctcatagttttgctagagtggctttgcgttatgctagtttccatattcatattaggattccatcttgtatctcta 30466773  T
Q  102 ctatta--ttataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    ||||||  || | ||||||||||||||| |||||| |||| ||||    
T  30466774 ctattattttttgaatgaaatgcaataagtttctttttgtcaaaa 30466818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 52 - 144
Target Start/End: Original strand, 40187415 - 40187507
Alignment:
Q  52 gcgtcatgctagttttcatattcatattagaatttcatcttgtatctctactattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    ||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  40187415 gcgtcttgctagttttcatattcatattaggattccatcttgtatctctactattattatgaatgaaatgcaataagtttcttcttgtaaaaa 40187507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 22 - 144
Target Start/End: Original strand, 6596171 - 6596294
Alignment:
Q  22 aagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctctactattattataaatgaaat 120  Q
    ||||| |||||||| ||| |||| ||| || ||||||||||||||| |||||||||||||| ||| |||||||||| |||||||||||| | ||||||||    
T  6596171 aagtcactcatagttttgttagagtggttttgcgtcatgctagtttccatattcatattaggattccatcttgtatatctactattattttgaatgaaat 6596270  T
Q  121 gcaataaatttcttcttgtaaaaa 144  Q
    ||||||| ||||||||||| ||||    
T  6596271 gcaataagtttcttcttgtcaaaa 6596294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 62; E-Value: 4e-27
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 42851969 - 42852116
Alignment:
Q  1 ttattcgaagacaagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctc 99  Q
    ||||||| |||||| |||| ||||||||||||||| ||||||   |||||| |||||||| |||||| |||||||||||||| ||| |||||| ||||||    
T  42851969 ttattcggagacaatccaacgaagtcgctcatagttttgctaacgtggctttgcgtcatgttagtttccatattcatattaggattccatcttatatctc 42852068  T
Q  100 ---tactattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
       || ||||||||| ||||||||| ||||| ||||||||||||||||    
T  42852069 tattattattattatgaatgaaatggaataagtttcttcttgtaaaaa 42852116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 9 - 144
Target Start/End: Original strand, 9026576 - 9026709
Alignment:
Q  9 agacaagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctctactatta 107  Q
    ||||||| ||| ||||||||||||||| |||||||| ||| || ||||||||||| ||| |||||||||||||  ||| ||||||||||||   ||||||    
T  9026576 agacaagtcaacgaagtcgctcatagttttgctagagtggatttgcgtcatgctaatttccatattcatattaagattccatcttgtatct---ctatta 9026672  T
Q  108 ttataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    |||| ||||||||| ||||| ||||||||| ||||||    
T  9026673 ttatgaatgaaatgaaataagtttcttcttataaaaa 9026709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 21947052 - 21946915
Alignment:
Q  1 ttattcgaagacaagccaatgaagtcgctcatagtcttgctag-atggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctc 99  Q
    ||||||| |||||||||||  |||||||||||||| ||||||| ||| ||| || ||||| |||||        |||||||  || ||||||||||| ||    
T  21947052 ttattcggagacaagccaacaaagtcgctcatagttttgctaggatgactttgcatcatgttagttc-------catattaagatctcatcttgtatatc 21946960  T
Q  100 tactattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||    
T  21946959 tactattattataaatgaaatggaataagtttcttcttgtaaaaa 21946915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 3 - 104
Target Start/End: Complemental strand, 28424012 - 28423910
Alignment:
Q  3 attcgaagacaagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctcta 101  Q
    ||||| ||||||||||| ||||||||||||||  | |||||| |||||| || |||||||||||| ||||||||||| |||||| ||||||||||||| |    
T  28424012 attcggagacaagccaacgaagtcgctcatagcttcgctagagtggctttgcatcatgctagtttccatattcatatcagaattccatcttgtatctcaa 28423913  T
Q  102 cta 104  Q
    |||    
T  28423912 cta 28423910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 9 - 137
Target Start/End: Original strand, 35827579 - 35827708
Alignment:
Q  9 agacaagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctctactatta 107  Q
    ||||||||| |  |||| ||||||||  |||||||| ||| |||  ||||||||| ||| |||||||||||||  ||||||||||||||||||  |  ||    
T  35827579 agacaagcctacaaagttgctcatagctttgctagaatggattcatgtcatgctaatttccatattcatattaagatttcatcttgtatctctctttata 35827678  T
Q  108 ttataaatgaaatgcaataaatttcttctt 137  Q
    |||||||| |||||||||||||||||||||    
T  35827679 ttataaataaaatgcaataaatttcttctt 35827708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 54 - 144
Target Start/End: Original strand, 2405229 - 2405319
Alignment:
Q  54 gtcatgctagttttcatattcatattagaatttcatcttgtatctctactattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    ||||||||||||||| |||| ||||||  ||| |||||| |||||||  |||||||||||||||||| |||||| ||| ||||||||||||    
T  2405229 gtcatgctagttttcgtatttatattaagattccatcttatatctctcatattattataaatgaaatacaataagttttttcttgtaaaaa 2405319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 12152783 - 12152833
Alignment:
Q  94 tatctctactattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  12152783 tatctctactattattttaaatgaaatgcaataaatttcatcttgtaaaaa 12152833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 24267849 - 24267771
Alignment:
Q  9 agacaagccaatgaagtcgctcatagtcttgcta-gatggcttcgcgtcatgctagttttcatattcatattagaattt 86  Q
    ||||||| ||||||||||||||||||| |||||| |||| ||| |||||||| |||||| |||||| || |||| ||||    
T  24267849 agacaagtcaatgaagtcgctcatagttttgctaggatgactttgcgtcatgttagtttccatatttatgttaggattt 24267771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 25506028 - 25506097
Alignment:
Q  54 gtcatgctagttttcatattcatattagaatttcatcttgtatctctactattattataaatgaaatgca 123  Q
    |||||| |||||||  || ||||||||  |||  ||||||||||||||||||| ||||||||||||||||    
T  25506028 gtcatgttagtttttgtagtcatattaagattgtatcttgtatctctactatttttataaatgaaatgca 25506097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 1e-42; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 1e-42
Query Start/End: Original strand, 9 - 139
Target Start/End: Original strand, 5839777 - 5839908
Alignment:
Q  9 agacaagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctctactatta 107  Q
    ||||||||||| ||||||||||||||  |||||||| |||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  5839777 agacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagtttccatattaatattagaatttcatcttgtatctctactatta 5839876  T
Q  108 ttataaatgaaatgcaataaatttcttcttgt 139  Q
    | || ||||||||||||||| |||||||||||    
T  5839877 tcatgaatgaaatgcaataagtttcttcttgt 5839908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 7e-38
Query Start/End: Original strand, 3 - 137
Target Start/End: Complemental strand, 11503202 - 11503067
Alignment:
Q  3 attcgaagacaagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctcta 101  Q
    ||||| ||||||||||| ||||||||||||||  | |||||| |||||| ||||||||||||||| |||||||||||||| ||| |||||||||||||||    
T  11503202 attcggagacaagccaacgaagtcgctcatagcttcgctagagtggctttgcgtcatgctagtttccatattcatattaggattccatcttgtatctcta 11503103  T
Q  102 ctattattataaatgaaatgcaataaatttcttctt 137  Q
    |||||||| | ||||||||||||||| |||||||||    
T  11503102 ctattattttgaatgaaatgcaataagtttcttctt 11503067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 3 - 144
Target Start/End: Original strand, 25663511 - 25663653
Alignment:
Q  3 attcgaagacaagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctcta 101  Q
    ||||| ||||||||||| ||||||||||||||  |||||||| ||| || ||||||||||| ||| |||||||||||||| ||| ||||||||||||||     
T  25663511 attcggagacaagccaacgaagtcgctcatagctttgctagagtggatttgcgtcatgctattttccatattcatattaggattccatcttgtatctctc 25663610  T
Q  102 ctattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    |||||||| | ||||||||||||||| ||||||||||||||||    
T  25663611 ctattattttgaatgaaatgcaataagtttcttcttgtaaaaa 25663653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 78; E-Value: 1e-36
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 32282978 - 32282841
Alignment:
Q  1 ttattcgaagacaagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctc 99  Q
    ||||||| |||||| |||| ||||||||||||||  |||||||| || ||| || |||||||||||| |||||||||||||| ||| |||||||||||||    
T  32282978 ttattcggagacaaaccaacgaagtcgctcatagctttgctagagtgactttgcatcatgctagtttccatattcatattaggattccatcttgtatctc 32282879  T
Q  100 tactattattataaatgaaatgcaataaatttcttctt 137  Q
    |||||||||||| ||||||||||||||| |||||||||    
T  32282878 tactattattatgaatgaaatgcaataagtttcttctt 32282841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 36531140 - 36531284
Alignment:
Q  1 ttattcgaagacaagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctc 99  Q
    ||||||| |||||||| || ||||||||| ||||| |||||||| | | || | ||||||||| ||| |||||||||||||| ||| |||||||| ||||    
T  36531140 ttattcggagacaagcaaacgaagtcgcttatagttttgctagaatagttttgtgtcatgctaatttccatattcatattaggattccatcttgtttctc 36531239  T
Q  100 tactattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||    
T  36531240 tactattattatgaatgaaatgcaataaatctcttcttgtaaaaa 36531284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 70; E-Value: 6e-32
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 40395243 - 40395385
Alignment:
Q  1 ttattcgaagacaagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctc 99  Q
    ||||||| ||||||| |||  ||||| |||||||  |||||||| ||| ||||||||||| |||||| ||||||||||||||||||| ||||||||||||    
T  40395243 ttattcggagacaagtcaactaagtcactcatagctttgctagagtggattcgcgtcatgttagtttccatattcatattagaattttatcttgtatctc 40395342  T
Q  100 tactattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    |||||||||  | |||||||| |||||||||||||||| ||||||    
T  40395343 tactattat--tgaatgaaatacaataaatttcttcttataaaaa 40395385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 65; E-Value: 6e-29
Query Start/End: Original strand, 44 - 144
Target Start/End: Original strand, 32578099 - 32578199
Alignment:
Q  44 atggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctctactattattataaatgaaatgcaataaatttcttcttgtaaaa 143  Q
    ||||||| ||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||| | ||||||||||||||| ||| ||||||| |||    
T  32578099 atggctttgcgtcatgctagtttccatattcatattaggattccatcttgtatctctactattattttgaatgaaatgcaataagtttattcttgtcaaa 32578198  T
Q  144 a 144  Q
    |    
T  32578199 a 32578199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 54 - 142
Target Start/End: Complemental strand, 14219877 - 14219789
Alignment:
Q  54 gtcatgctagttttcatattcatattagaatttcatcttgtatctctactattattataaatgaaatgcaataaatttcttcttgtaaa 142  Q
    |||||| |||||| |||||||||||||  |||||| |||  || |||||||||||| |||||||||| |||||||||||||||||||||    
T  14219877 gtcatgttagtttccatattcatattaagatttcagcttacatttctactattattttaaatgaaatacaataaatttcttcttgtaaa 14219789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 9 - 144
Target Start/End: Original strand, 10342374 - 10342514
Alignment:
Q  9 agacaagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattca---tattagaatttcatcttgtatctctacta 104  Q
    |||||| |||| ||| ||||||||||  |||||| | |||||| | ||||||||||||||||||||||   |||||| ||| |||||| |||||||||||    
T  10342374 agacaaaccaacgaaatcgctcatagctttgctaaaatggctttgtgtcatgctagttttcatattcatattattaggattccatcttatatctctacta 10342473  T
Q  105 ttatt-ataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    ||||| || |||||||| |||||||||| || | |||||||    
T  10342474 ttattaatgaatgaaatacaataaatttattatcgtaaaaa 10342514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 131
Target Start/End: Original strand, 28570739 - 28570816
Alignment:
Q  54 gtcatgctagttttcatattcatattagaatttcatcttgtatctctactattattataaatgaaatgcaataaattt 131  Q
    |||||| |||||| | | |||||||||||| |  ||| | |||||||| ||||||||||||||||||||| |||||||    
T  28570739 gtcatgttagtttccgtgttcatattagaactctatcatatatctctattattattataaatgaaatgcactaaattt 28570816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 131
Target Start/End: Original strand, 28578332 - 28578409
Alignment:
Q  54 gtcatgctagttttcatattcatattagaatttcatcttgtatctctactattattataaatgaaatgcaataaattt 131  Q
    |||||| |||||| | | |||||||||||| |  ||| | |||||||| ||||||||||||||||||||| |||||||    
T  28578332 gtcatgttagtttccgtgttcatattagaactctatcatatatctctattattattataaatgaaatgcactaaattt 28578409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 123
Target Start/End: Complemental strand, 31037759 - 31037712
Alignment:
Q  76 tattagaatttcatcttgtatctctactattattataaatgaaatgca 123  Q
    ||||| |||| ||||||||||||||||||||||| | |||||||||||    
T  31037759 tattaaaattccatcttgtatctctactattattttgaatgaaatgca 31037712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 82 - 123
Target Start/End: Original strand, 43234217 - 43234258
Alignment:
Q  82 aatttcatcttgtatctctactattattataaatgaaatgca 123  Q
    |||||||||||||||||||||| ||||| ||||| |||||||    
T  43234217 aatttcatcttgtatctctactcttattttaaatcaaatgca 43234258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 44
Target Start/End: Complemental strand, 30273721 - 30273686
Alignment:
Q  9 agacaagccaatgaagtcgctcatagtcttgctaga 44  Q
    |||||||| |||||||||||||||| ||||||||||    
T  30273721 agacaagcgaatgaagtcgctcatactcttgctaga 30273686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 7e-41; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 7e-41
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 48522168 - 48522312
Alignment:
Q  1 ttattcgaagacaagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctc 99  Q
    ||||||| ||||||| ||| ||||||||||||||  |||||||| |||||| ||||||||||||||| |||||||||||||  ||| |||||| ||||||    
T  48522168 ttattcggagacaagtcaacgaagtcgctcatagctttgctagagtggctttgcgtcatgctagtttccatattcatattaagattccatcttatatctc 48522267  T
Q  100 tactattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||    
T  48522268 tactattattataaatgaaatgcaataagtttcttcttgttaaaa 48522312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 6e-23
Query Start/End: Original strand, 58 - 144
Target Start/End: Complemental strand, 25070903 - 25070817
Alignment:
Q  58 tgctagttttcatattcatattagaatttcatcttgtatctctactattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    ||||||||| ||||||||| |||| ||| |||||| ||||||||| |||||||| ||||||||||||||||||| ||||||||||||    
T  25070903 tgctagtttccatattcattttaggattccatcttatatctctaccattattatgaatgaaatgcaataaattttttcttgtaaaaa 25070817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 54 - 144
Target Start/End: Complemental strand, 15393584 - 15393494
Alignment:
Q  54 gtcatgctagttttcatattcatattagaatttcatcttgtatctctactattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    ||||||||| ||||  |||||||||||  ||||||||||||||||||||| ||||||||||||||||||| |||  |||||  ||||||||    
T  15393584 gtcatgctaatttttgtattcatattaagatttcatcttgtatctctactgttattataaatgaaatgcattaagcttctttctgtaaaaa 15393494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 4 - 144
Target Start/End: Original strand, 26347349 - 26347490
Alignment:
Q  4 ttcgaagacaagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctctac 102  Q
    |||| ||||||  |||||||||||||||||  |||  |||| ||||||  | |||| ||| |||  ||||| ||||||  ||| ||||||||||||||||    
T  26347349 ttcggagacaaatcaatgaagtcgctcataaccttattagagtggctttacatcatactaatttctatatttatattatgattccatcttgtatctctac 26347448  T
Q  103 tattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    ||||||||| ||| ||||  ||||||||||||||||||||||    
T  26347449 tattattatgaataaaataaaataaatttcttcttgtaaaaa 26347490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 68 - 144
Target Start/End: Original strand, 19956605 - 19956681
Alignment:
Q  68 catattcatattagaatttcatcttgtatctctactattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    ||||| |||||||| ||| |||||||||||| || ||||||||| ||||||||| ||||| ||||||||||||||||    
T  19956605 catatgcatattaggattccatcttgtatctataatattattatgaatgaaatggaataagtttcttcttgtaaaaa 19956681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 20621463 - 20621532
Alignment:
Q  54 gtcatgctagttttcatattcatattagaatttcatcttgtatctctactattattataaatgaaatgca 123  Q
    ||||| ||||||||| ||||||||||| ||||  |||||||||||||||| |||||||||| ||||||||    
T  20621463 gtcatactagttttcgtattcatattaaaattctatcttgtatctctacttttattataaaggaaatgca 20621532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 9 - 131
Target Start/End: Original strand, 31592321 - 31592444
Alignment:
Q  9 agacaagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctctactatta 107  Q
    ||||||||||||||||| ||||||||| | |||||  | ||| |  ||||||||||||| | ||||   ||| ||||| ||||||||||||||||| ||     
T  31592321 agacaagccaatgaagttgctcatagtttagctagggtagctccatgtcatgctagtttccgtattttcattcgaattccatcttgtatctctactcttt 31592420  T
Q  108 ttataaatgaaatgcaataaattt 131  Q
    || ||||||||||||| |||||||    
T  31592421 ttttaaatgaaatgcattaaattt 31592444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 70 - 123
Target Start/End: Original strand, 11080015 - 11080068
Alignment:
Q  70 tattcatattagaatttcatcttgtatctctactattattataaatgaaatgca 123  Q
    ||||||||| || ||| |||||||||||||||| ||||||||||||||||||||    
T  11080015 tattcatatcaggattccatcttgtatctctacgattattataaatgaaatgca 11080068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 55 - 112
Target Start/End: Original strand, 25698649 - 25698706
Alignment:
Q  55 tcatgctagttttcatattcatattagaatttcatcttgtatctctactattattata 112  Q
    ||||||||||||||||||| |||||| |||||||||  |||| | |||| ||||||||    
T  25698649 tcatgctagttttcatatttatattaaaatttcatcaggtatatgtactcttattata 25698706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 83; Significance: 1e-39; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 3 - 144
Target Start/End: Original strand, 187132 - 187274
Alignment:
Q  3 attcgaagacaagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctcta 101  Q
    ||||| ||||||||||| ||| ||||||||||  |||||| | |||||| ||||||||||||||| |||||||||||||| ||| |||||||||||||||    
T  187132 attcggagacaagccaacgaattcgctcatagctttgctatagtggctttgcgtcatgctagtttccatattcatattaggattccatcttgtatctcta 187231  T
Q  102 ctattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    |||||||| | ||||||||||||||| ||||||||||||||||    
T  187232 ctattattttgaatgaaatgcaataagtttcttcttgtaaaaa 187274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 1e-39; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 3 - 144
Target Start/End: Complemental strand, 30796931 - 30796789
Alignment:
Q  3 attcgaagacaagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctcta 101  Q
    ||||| ||||||||||| ||||||||||||||  |||||||| |||||| ||||| ||||||||| |||||||||||||| ||| ||||||| |||||||    
T  30796931 attcggagacaagccaacgaagtcgctcatagctttgctagagtggctttgcgtcttgctagtttccatattcatattaggattccatcttgcatctcta 30796832  T
Q  102 ctattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    |||||||| | ||||||||||||||| ||||||||||||||||    
T  30796831 ctattattttgaatgaaatgcaataagtttcttcttgtaaaaa 30796789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 4e-39
Query Start/End: Original strand, 9 - 133
Target Start/End: Original strand, 1721983 - 1722108
Alignment:
Q  9 agacaagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctctactatta 107  Q
    ||||||||||| ||||||||||||||| | |||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||    
T  1721983 agacaagccaacgaagtcgctcatagtttggctagagtggcttcgcgtcatgctagtttccatattcatattaaaatttcatcttgtatctctattatta 1722082  T
Q  108 ttataaatgaaatgcaataaatttct 133  Q
    |||| || |||||||||||| |||||    
T  1722083 ttatgaaagaaatgcaataagtttct 1722108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 39860930 - 39861074
Alignment:
Q  1 ttattcgaagacaagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctc 99  Q
    ||||||| ||||||||||| ||||||||||||| | |||||||  |||||||||||||||||||||| |||||||||||||  |||  ||||||||||||    
T  39860930 ttattcggagacaagccaaggaagtcgctcataattttgctagggtggcttcgcgtcatgctagtttccatattcatattatgattcaatcttgtatctc 39861029  T
Q  100 tactattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    |||||||||||| || |||||||||||| ||| ||||||||||||    
T  39861030 tactattattatgaaagaaatgcaataagttttttcttgtaaaaa 39861074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 3 - 144
Target Start/End: Complemental strand, 29242241 - 29242099
Alignment:
Q  3 attcgaagacaagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctcta 101  Q
    ||||| ||||||||||||||||||||||||||  |||||||| ||||||  | |||||||||||| |||||| ||||||| ||| ||| |||||||||||    
T  29242241 attcggagacaagccaatgaagtcgctcatagctttgctagagtggctttacatcatgctagtttccatatttatattaggattccatattgtatctcta 29242142  T
Q  102 ctattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    |||||||| | ||||||||||||||| ||||||||||||||||    
T  29242141 ctattattttgaatgaaatgcaataagtttcttcttgtaaaaa 29242099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 49 - 144
Target Start/End: Original strand, 36978760 - 36978855
Alignment:
Q  49 ttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctctactattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    ||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  36978760 ttcgcgtcatgctagttttcatatttatattaggattccatcttgtatctctactattattatgaatgaaatgcaataagtttcttcttgtaaaaa 36978855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 75; E-Value: 6e-35
Query Start/End: Original strand, 3 - 144
Target Start/End: Complemental strand, 9609635 - 9609493
Alignment:
Q  3 attcgaagacaagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctcta 101  Q
    ||||| ||||||||||| ||||||||||||||  | |||||| |||||| || |||||||||||| |||||||||||||| ||| |||||||||||||||    
T  9609635 attcggagacaagccaacgaagtcgctcatagcttcgctagagtggctttgcatcatgctagtttccatattcatattaggattccatcttgtatctcta 9609536  T
Q  102 ctattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    |||||||| |  |||||||||||||| ||||||||||| ||||    
T  9609535 ctattattttgtatgaaatgcaataagtttcttcttgtcaaaa 9609493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 6e-23
Query Start/End: Original strand, 58 - 144
Target Start/End: Original strand, 4052904 - 4052990
Alignment:
Q  58 tgctagttttcatattcatattagaatttcatcttgtatctctactattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    ||||||||| ||||||||| |||| ||| |||||| ||||||||| |||||||| ||||||||||||||||||| ||||||||||||    
T  4052904 tgctagtttccatattcattttaggattccatcttatatctctaccattattatgaatgaaatgcaataaattttttcttgtaaaaa 4052990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 83 - 144
Target Start/End: Complemental strand, 16007184 - 16007123
Alignment:
Q  83 atttcatcttgtatctctactattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||    
T  16007184 atttcatcttgtatctctactattattatgaatgaaatgcaataagtttcttcttgtcaaaa 16007123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 57 - 111
Target Start/End: Complemental strand, 27452573 - 27452519
Alignment:
Q  57 atgctagttttcatattcatattagaatttcatcttgtatctctactattattat 111  Q
    |||||||||| |||||||||||||||||||||||||||||||||| ||| |||||    
T  27452573 atgctagtttccatattcatattagaatttcatcttgtatctctattataattat 27452519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 40109287 - 40109331
Alignment:
Q  100 tactattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||    
T  40109287 tactattattatgaatgaaatgcaataaatttcttcttgtcaaaa 40109331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 144
Target Start/End: Complemental strand, 27452515 - 27452474
Alignment:
Q  103 tattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    ||||||||| ||||||||||||||||||||||||||| ||||    
T  27452515 tattattatgaatgaaatgcaataaatttcttcttgttaaaa 27452474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 1e-39; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 10213822 - 10213948
Alignment:
Q  1 ttattcgaagacaagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctc 99  Q
    ||||||| |||||| |||| ||||||||||||||| |||||||  |||||||||||||||||||||| |||||||||||||  |||||||||||||||||    
T  10213822 ttattcggagacaaaccaacgaagtcgctcatagttttgctagggtggcttcgcgtcatgctagtttccatattcatattaagatttcatcttgtatctc 10213921  T
Q  100 tactattattataaatgaaatgcaata 126  Q
    |||||||||||| ||||||||||||||    
T  10213922 tactattattatgaatgaaatgcaata 10213948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 4e-39
Query Start/End: Original strand, 4 - 144
Target Start/End: Complemental strand, 38451824 - 38451684
Alignment:
Q  4 ttcgaagacaagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctctac 102  Q
    |||| ||||||||||| ||| ||||||||||  |||||||| |||||| ||  ||||||||||| ||||||||||||||||||||||||||||||| |||    
T  38451824 ttcggagacaagccaacgaaatcgctcatagctttgctagagtggctttgcaccatgctagtttccatattcatattagaatttcatcttgtatct-tac 38451726  T
Q  103 tattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    ||||||||| ||||||||||||||| ||||||||||||||||    
T  38451725 tattattatgaatgaaatgcaataagtttcttcttgtaaaaa 38451684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 24477611 - 24477467
Alignment:
Q  1 ttattcgaagacaagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctc 99  Q
    ||||||| ||| || |||| ||||||||||||||| |||||||| |||||| |||| ||||||||||||||||||||||||| ||| |||||| ||||||    
T  24477611 ttattcggagataaaccaacgaagtcgctcatagttttgctagagtggctttgcgttatgctagttttcatattcatattaggattccatcttatatctc 24477512  T
Q  100 tactattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    ||||||||| || ||||||||||||||| ||||||||||| ||||    
T  24477511 tactattatgatgaatgaaatgcaataagtttcttcttgtcaaaa 24477467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 80; E-Value: 7e-38
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 45086120 - 45085981
Alignment:
Q  1 ttattcgaagacaagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctc 99  Q
    ||||||| |||||||||||  |||||||||||||  | |||||| |||||||||||||||||||||| |||||||||||||| ||| |||||| ||||||    
T  45086120 ttattcggagacaagccaacaaagtcgctcatagcttggctagagtggcttcgcgtcatgctagtttccatattcatattaggattccatcttatatctc 45086021  T
Q  100 tactattattataaatgaaatgcaataaatttcttcttgt 139  Q
    |||||||||||| ||||||||| ||||| |||||||||||    
T  45086020 tactattattatgaatgaaatgaaataagtttcttcttgt 45085981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 77; E-Value: 4e-36
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 23407884 - 23407740
Alignment:
Q  1 ttattcgaagacaagccaatgaagtcgctcatagtcttgctag-atggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctc 99  Q
    ||||||| |||||||| ||  |||||||||||||| ||| ||| ||| |||||| |||||||||||| |||||||||||||  ||| |||||| ||||||    
T  23407884 ttattcggagacaagcaaacaaagtcgctcatagttttgttaggatgtcttcgcatcatgctagtttccatattcatattaagattccatcttatatctc 23407785  T
Q  100 tactattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    |||||||||||| || |||||||||||||||||||||||||||||    
T  23407784 tactattattatgaacgaaatgcaataaatttcttcttgtaaaaa 23407740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 77; E-Value: 4e-36
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 23769910 - 23769766
Alignment:
Q  1 ttattcgaagacaagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctc 99  Q
    ||||||| ||||||||||| ||||||||||||||  |||||||| | |||| |   ||||||||||| ||||||||||||||||||  ||||||||||||    
T  23769910 ttattcggagacaagccaacgaagtcgctcatagctttgctagagtagctttgttacatgctagtttccatattcatattagaattctatcttgtatctc 23769811  T
Q  100 tactattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    |||||||||||| ||||||||||||||| ||| ||||||||||||    
T  23769810 tactattattatgaatgaaatgcaataagtttgttcttgtaaaaa 23769766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 9 - 144
Target Start/End: Original strand, 22605930 - 22606066
Alignment:
Q  9 agacaagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctctactatta 107  Q
    ||||||||||| | ||||||||||||  |||| ||| ||| || |||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||    
T  22605930 agacaagccaacggagtcgctcatagctttgcgagagtggttttgcgtcatgctagttttcatattcatattaggattccatcttgtatctctacaatta 22606029  T
Q  108 ttataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    |||| ||||||||||||| | ||||||||||| ||||    
T  22606030 ttatgaatgaaatgcaatcagtttcttcttgtcaaaa 22606066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 9 - 100
Target Start/End: Complemental strand, 40074156 - 40074065
Alignment:
Q  9 agacaagccaatgaagtcgctcatagtcttgctagatggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctct 100  Q
    |||||||||||  |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||    
T  40074156 agacaagccaacaaagtcgctcatagttttgctaaatggcttcgcgtcatgctagttttcatattcatattaagattccatcttgtatctct 40074065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 60; E-Value: 6e-26
Query Start/End: Original strand, 53 - 144
Target Start/End: Original strand, 11616688 - 11616779
Alignment:
Q  53 cgtcatgctagttttcatattcatattagaatttcatcttgtatctctactattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    |||||||||||||| |||||||||||||| |||  |||||||||||||||||||||| | ||||||||||||||| ||||||||||| ||||    
T  11616688 cgtcatgctagtttccatattcatattaggattctatcttgtatctctactattattttgaatgaaatgcaataagtttcttcttgtcaaaa 11616779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 57; E-Value: 4e-24
Query Start/End: Original strand, 13 - 144
Target Start/End: Original strand, 32025536 - 32025667
Alignment:
Q  13 aagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctctactattattat 111  Q
    ||||||||||||| ||||||||  |||||||| || ||||  ||||||||||||| |||||| ||||||||||||||| || ||||||||| ||||||||    
T  32025536 aagccaatgaagttgctcatagctttgctagagtgacttcatgtcatgctagtttccatatttatattagaatttcatgttatatctctacaattattat 32025635  T
Q  112 aaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
     ||| ||| || |||| ||||||||||||||||    
T  32025636 -aataaaacgctataagtttcttcttgtaaaaa 32025667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 55; E-Value: 6e-23
Query Start/End: Original strand, 21 - 138
Target Start/End: Complemental strand, 31411480 - 31411362
Alignment:
Q  21 gaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctctactattattataaatgaaa 119  Q
    ||||||| ||||||  |||||||| || ||| | ||||| ||||||| |||||||||||||| |||||||||||||| |||| ||||||||| |||||||    
T  31411480 gaagtcgttcatagctttgctagagtgactttgtgtcattctagtttccatattcatattaggatttcatcttgtatatctattattattatgaatgaaa 31411381  T
Q  120 tgcaataaatttcttcttg 138  Q
    | |||||| ||||||||||    
T  31411380 tacaataagtttcttcttg 31411362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 75 - 144
Target Start/End: Original strand, 20214282 - 20214351
Alignment:
Q  75 atattagaatttcatcttgtatctctactattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    ||||||| ||||||| ||||||||||||||||||| | ||||||||||||||| ||||||||||||||||    
T  20214282 atattaggatttcattttgtatctctactattattttgaatgaaatgcaataagtttcttcttgtaaaaa 20214351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 22 - 144
Target Start/End: Original strand, 1604881 - 1605003
Alignment:
Q  22 aagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctctactattattataaatgaaat 120  Q
    |||||| ||||||| | |||||| ||| || | |||||| |||||||| ||||||||||||| || |||||| ||| |||  |||||||||||||||||     
T  1604881 aagtcgttcatagtttcgctagagtggattagtgtcatgttagttttcgtattcatattaga-ttccatcttttatatctcttattattataaatgaaac 1604979  T
Q  121 gcaataaatttcttcttgtaaaaa 144  Q
    ||||||| ||||||||||||||||    
T  1604980 gcaataagtttcttcttgtaaaaa 1605003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 54 - 144
Target Start/End: Original strand, 28317810 - 28317899
Alignment:
Q  54 gtcatgctagttttcatattcatattagaatttcatcttgtatctctactattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    |||||| || |||||||||| ||||||  |||||||||| |||||||||||||||| ||||| ||||||||||||||| ||| ||||||||    
T  28317810 gtcatgataattttcatatttatattaagatttcatcttatatctctactattattttaaataaaatgcaataaattt-ttcctgtaaaaa 28317899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 136
Target Start/End: Original strand, 27177736 - 27177864
Alignment:
Q  9 agacaagccaatgaagtcgctcatagtcttgctag-atggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctctactatta 107  Q
    ||||||||||| ||||| ||||||||| |  |||| | ||||| | ||||| || |||| |||||||||||||  ||| | |  ||||||||||||||||    
T  27177736 agacaagccaacgaagtagctcatagtttcactaggacggctttgtgtcattcttgtttccatattcatattaagattccgttgtgtatctctactatta 27177835  T
Q  108 ttataaatgaaatgcaataaatttcttct 136  Q
    || ||| |||||| |||||| ||||||||    
T  27177836 ttttaattgaaatacaataagtttcttct 27177864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 144
Target Start/End: Original strand, 1605079 - 1605120
Alignment:
Q  103 tattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    ||||||||||||| ||||||||||| ||||||||||||||||    
T  1605079 tattattataaataaaatgcaataagtttcttcttgtaaaaa 1605120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 74 - 107
Target Start/End: Original strand, 2599233 - 2599266
Alignment:
Q  74 catattagaatttcatcttgtatctctactatta 107  Q
    |||||||| |||||||||||||||||||||||||    
T  2599233 catattaggatttcatcttgtatctctactatta 2599266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 144
Target Start/End: Complemental strand, 16349588 - 16349452
Alignment:
Q  9 agacaagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctctactatta 107  Q
    ||||||| ||||||||| ||||||||| | | |||| | |||||   |||||||||||||  |||    ||| |||||||||| ||||||| |||| |||    
T  16349588 agacaagtcaatgaagttgctcatagtttagatagagtagcttcatatcatgctagtttttgtatgttcatttgaatttcatcatgtatctatactctta 16349489  T
Q  108 ttataaatgaaatgcaataa-atttcttcttgtaaaaa 144  Q
    || ||||||||||||| ||| |||||| ||||||||||    
T  16349488 ttttaaatgaaatgcattaagatttct-cttgtaaaaa 16349452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0577 (Bit Score: 79; Significance: 3e-37; HSPs: 1)
Name: scaffold0577
Description:

Target: scaffold0577; HSP #1
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 3 - 144
Target Start/End: Complemental strand, 2332 - 2190
Alignment:
Q  3 attcgaagacaagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctcta 101  Q
    ||||| ||||||||||| ||||||||||||||  |||||||| || ||| ||||||||||||||| |||||||||||||| |||  ||||||||||||||    
T  2332 attcgcagacaagccaacgaagtcgctcatagctttgctagagtgactttgcgtcatgctagtttccatattcatattaggattctatcttgtatctcta 2233  T
Q  102 ctattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    |||||||||| |||||||||||| || ||| ||||||||||||    
T  2232 ctattattatgaatgaaatgcaagaagtttattcttgtaaaaa 2190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0279 (Bit Score: 79; Significance: 3e-37; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 3 - 144
Target Start/End: Original strand, 6719 - 6861
Alignment:
Q  3 attcgaagacaagccaatgaagtcgctcatagtcttgctagat-ggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctcta 101  Q
    ||||| ||||||| ||| ||||||||||||||  ||||||||  ||||| ||||||||||||||| |||||||||||||| ||| |||||||||||||||    
T  6719 attcggagacaagacaacgaagtcgctcatagctttgctagagcggctttgcgtcatgctagtttccatattcatattaggattccatcttgtatctcta 6818  T
Q  102 ctattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    |||||||| | ||||||||||||||| ||| ||||||||||||    
T  6819 ctattattttgaatgaaatgcaataagtttattcttgtaaaaa 6861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 73; Significance: 1e-33; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 58404 - 58548
Alignment:
Q  1 ttattcgaagacaagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctc 99  Q
    ||||| ||||||||||||| |||||| |||||||  ||||| || ||||||   ||||||||||||| ||||||||||||||  || |||||||||||||    
T  58404 ttattggaagacaagccaacgaagtctctcatagctttgctcgagtggctttatgtcatgctagtttccatattcatattagggttccatcttgtatctc 58503  T
Q  100 tactattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    |||||||||||| ||||||||||||||| ||||||||||| ||||    
T  58504 tactattattatgaatgaaatgcaataagtttcttcttgtcaaaa 58548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0450 (Bit Score: 67; Significance: 4e-30; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 67; E-Value: 4e-30
Query Start/End: Original strand, 3 - 136
Target Start/End: Original strand, 5297 - 5431
Alignment:
Q  3 attcgaagacaagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctcta 101  Q
    ||||| ||||||||||| |||||||||||||   |||||| | || ||| || |||||||| ||| ||||||||||||| |||| |||||||||||||||    
T  5297 attcggagacaagccaacgaagtcgctcataactttgctatagtgactttgcatcatgctaatttccatattcatattaaaattccatcttgtatctcta 5396  T
Q  102 ctattattataaatgaaatgcaataaatttcttct 136  Q
    |||||||||| ||||||||||||||| ||||||||    
T  5397 ctattattatgaatgaaatgcaataagtttcttct 5431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 56; Significance: 1e-23; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 69 - 144
Target Start/End: Original strand, 20703 - 20778
Alignment:
Q  69 atattcatattagaatttcatcttgtatctctactattattataaatgaaatgcaataaatttcttcttgtaaaaa 144  Q
    ||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  20703 atattcatattaagattacatcttgtatctctactattattataaatgaaatgcaataagtttcttcttgtcaaaa 20778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 55; Significance: 6e-23; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 55; E-Value: 6e-23
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 216466 - 216576
Alignment:
Q  1 ttattcgaagacaagccaatgaagtcgctcatagtcttgctaga-tggcttcgcgtcatgctagttttcatattcatattagaatttcatcttgtatctc 99  Q
    ||||||| ||||||||||| ||||||||||||    |||||||| |||||| ||| |||||||||||||||||||||||||| ||| |||||  ||||||    
T  216466 ttattcggagacaagccaacgaagtcgctcattcctttgctagagtggctttgcgccatgctagttttcatattcatattaggattccatctaatatctc 216565  T
Q  100 tactattatta 110  Q
    |||||||||||    
T  216566 tactattatta 216576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 48; Significance: 8e-19; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 52 - 127
Target Start/End: Complemental strand, 5395 - 5320
Alignment:
Q  52 gcgtcatgctagttttcatattcatattagaatttcatcttgtatctctactattattataaatgaaatgcaataa 127  Q
    |||||||| ||||||| ||||||||||||  ||| |||||||||||||||||||||| || |||||||||||||||    
T  5395 gcgtcatgttagtttttatattcatattaagattccatcttgtatctctactattatcatgaatgaaatgcaataa 5320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 118
Target Start/End: Original strand, 146612 - 146648
Alignment:
Q  82 aatttcatcttgtatctctactattattataaatgaa 118  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  146612 aatttcatcttatatctatactattattataaatgaa 146648  T

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