View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5876-16 (Length: 144)
Name: Solexa-NF5876-16
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5876-16 |
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Alignment Details
Target: chr5 (Bit Score: 110; Significance: 8e-56; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 8e-56
Query Start/End: Original strand, 8 - 141
Target Start/End: Original strand, 27791910 - 27792043
Alignment:
| Q |
8 |
catgaatgcggcaaatttgggactgcagggaatcctgggcatgacagtaaagttaagctttacacctgtgacagaagagttccactagatgtgaaagcaa |
107 |
Q |
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| T |
27791910 |
catgaatacggcaaatttgtgactgcagggaatcctgggcatgacagtaaagttaagctttacatctggggcagaagagttccactagatgtgaaagcaa |
27792009 |
T |
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| Q |
108 |
ggctaaattagttagtacatccttgtagtttcat |
141 |
Q |
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| T |
27792010 |
ggataaattagttagtacatccttgtagtttcat |
27792043 |
T |
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