View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5876-2 (Length: 247)
Name: Solexa-NF5876-2
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5876-2 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 8 - 247
Target Start/End: Original strand, 35573088 - 35573327
Alignment:
| Q |
8 |
aaaagttgggctaaattagatatttaatctttaattcggggttgggtagttcaactaatttaaattaagggaaaaagagttggaggtcttgacttggttt |
107 |
Q |
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| T |
35573088 |
aaaagttgggctaaattagatatttaatctttaattaggggttgggtagtttaactaatttaaattaagggaaaaagagttggaggtcttgacttggttt |
35573187 |
T |
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| Q |
108 |
gagctatatcaccacgattnnnnnnnnnttaacataactcactctataaataaacatcttcattgtattatttattacaccatcttttatcaatttatat |
207 |
Q |
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| T |
35573188 |
gagctatatcaccacgattaaaaaaaaattaacataactcactctataaataagcattttcattgtattatttattacaccatcttttatcaatttatat |
35573287 |
T |
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| Q |
208 |
tcattcgatttgaattcttatgagtacttatatgctctct |
247 |
Q |
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| T |
35573288 |
tcattcggtttgaattcttatgagtacttatatgctctct |
35573327 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 94
Target Start/End: Original strand, 17608090 - 17608135
Alignment:
| Q |
49 |
ttgggtagttcaactaatttaaattaagggaaaaagagttggaggt |
94 |
Q |
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|||| ||||||||||||||| ||||||||||| ||||||| ||||| |
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| T |
17608090 |
ttggatagttcaactaatttgaattaagggaataagagttagaggt |
17608135 |
T |
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