View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5876-21 (Length: 137)

Name: Solexa-NF5876-21
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5876-21
Solexa-NF5876-21
[»] chr1 (6 HSPs)
chr1 (9-91)||(51048029-51048111)
chr1 (9-64)||(8261503-8261558)
chr1 (9-56)||(38674296-38674343)
chr1 (10-63)||(36184636-36184689)
chr1 (9-49)||(30196190-30196230)
chr1 (10-49)||(52860536-52860575)
[»] chr2 (10 HSPs)
chr2 (21-91)||(1775695-1775764)
chr2 (9-56)||(42578451-42578498)
chr2 (9-56)||(38587192-38587239)
chr2 (10-56)||(13863251-13863297)
chr2 (9-49)||(11738664-11738704)
chr2 (9-49)||(28634546-28634586)
chr2 (9-64)||(6364608-6364663)
chr2 (9-63)||(3462719-3462773)
chr2 (9-65)||(725038-725094)
chr2 (1-56)||(4916916-4916971)
[»] chr8 (8 HSPs)
chr8 (9-56)||(38783622-38783669)
chr8 (9-63)||(37513235-37513289)
chr8 (9-56)||(6295422-6295469)
chr8 (9-49)||(9579281-9579321)
chr8 (9-49)||(43325567-43325607)
chr8 (9-55)||(10405775-10405821)
chr8 (16-49)||(31289160-31289193)
chr8 (9-49)||(9636181-9636221)
[»] chr6 (2 HSPs)
chr6 (9-71)||(10365065-10365127)
chr6 (9-56)||(32818848-32818895)
[»] chr5 (9 HSPs)
chr5 (9-56)||(233543-233590)
chr5 (9-64)||(7440948-7441003)
chr5 (9-56)||(33656785-33656832)
chr5 (14-63)||(26077972-26078021)
chr5 (1-56)||(1156947-1157002)
chr5 (9-59)||(8223938-8223988)
chr5 (9-37)||(19962599-19962627)
chr5 (9-56)||(12464196-12464243)
chr5 (18-49)||(24905382-24905413)
[»] chr3 (7 HSPs)
chr3 (9-63)||(39692510-39692564)
chr3 (9-61)||(20497295-20497347)
chr3 (9-63)||(31880798-31880852)
chr3 (9-63)||(44247589-44247643)
chr3 (9-56)||(45059234-45059281)
chr3 (10-55)||(37324905-37324950)
chr3 (9-49)||(18370971-18371011)
[»] chr7 (9 HSPs)
chr7 (9-65)||(11202483-11202539)
chr7 (9-65)||(37545515-37545570)
chr7 (9-57)||(40091131-40091179)
chr7 (9-62)||(11749267-11749320)
chr7 (9-65)||(33989674-33989730)
chr7 (9-61)||(20383798-20383850)
chr7 (1-56)||(19933607-19933662)
chr7 (1-56)||(19964746-19964801)
chr7 (9-56)||(22643983-22644030)
[»] scaffold0031 (2 HSPs)
scaffold0031 (9-63)||(105638-105692)
scaffold0031 (9-63)||(1610-1664)
[»] chr4 (7 HSPs)
chr4 (9-49)||(11671792-11671832)
chr4 (9-63)||(52399232-52399286)
chr4 (9-63)||(53062195-53062249)
chr4 (9-61)||(35106132-35106184)
chr4 (9-56)||(39121255-39121301)
chr4 (9-56)||(51075042-51075089)
chr4 (9-56)||(53921105-53921152)


Alignment Details
Target: chr1 (Bit Score: 79; Significance: 3e-37; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 9 - 91
Target Start/End: Complemental strand, 51048111 - 51048029
Alignment:
Q  9 gaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttgaatacaaaaatgattaattctagatttga 91  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  51048111 gaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttgagtacaaaaatgattaattctagatttga 51048029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 8261558 - 8261503
Alignment:
Q  9 gaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttgaa 64  Q
    ||||||||||||||||||||||||||||| | | ||||||||| ||| ||||||||    
T  8261558 gaaatagagaagagagaagtgttgattatttttgaaagtacaagaatgtccttgaa 8261503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 56
Target Start/End: Original strand, 38674296 - 38674343
Alignment:
Q  9 gaaatagagaagagagaagtgttgattatatctaaaagtacaaaaata 56  Q
    ||||||||||||| ||||||||||||||| | ||||||||| ||||||    
T  38674296 gaaatagagaagaaagaagtgttgattatttttaaaagtaccaaaata 38674343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 36184689 - 36184636
Alignment:
Q  10 aaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttga 63  Q
    ||||||||||||||||||||| ||| ||| | |||| |||||||||| ||||||    
T  36184689 aaatagagaagagagaagtgtcgataataacaaaaaatacaaaaatacccttga 36184636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 30196230 - 30196190
Alignment:
Q  9 gaaatagagaagagagaagtgttgattatatctaaaagtac 49  Q
    ||||||||||||||| |||||||| |||||| |||||||||    
T  30196230 gaaatagagaagagataagtgttgtttatatttaaaagtac 30196190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 52860575 - 52860536
Alignment:
Q  10 aaatagagaagagagaagtgttgattatatctaaaagtac 49  Q
    ||||||||||||||||||||||  |||||| |||||||||    
T  52860575 aaatagagaagagagaagtgttttttatatttaaaagtac 52860536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 9e-28; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 9e-28
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 1775695 - 1775764
Alignment:
Q  21 agagaagtgttgattatatctaaaagtacaaaaatatccttgaatacaaaaatgattaattctagatttga 91  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1775695 agagaagtgttgattatatctaaaagtacaaaaatatccttgaata-aaaaatgattaattctagatttga 1775764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 42578498 - 42578451
Alignment:
Q  9 gaaatagagaagagagaagtgttgattatatctaaaagtacaaaaata 56  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||    
T  42578498 gaaatagagaagagagaagttttgattatatctaaaagtacaaaaata 42578451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 56
Target Start/End: Original strand, 38587192 - 38587239
Alignment:
Q  9 gaaatagagaagagagaagtgttgattatatctaaaagtacaaaaata 56  Q
    ||||| ||||||||||||||||||||||| | ||||||||||||||||    
T  38587192 gaaattgagaagagagaagtgttgattatttttaaaagtacaaaaata 38587239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 10 - 56
Target Start/End: Original strand, 13863251 - 13863297
Alignment:
Q  10 aaatagagaagagagaagtgttgattatatctaaaagtacaaaaata 56  Q
    |||| ||||||||||||||||||||||| | ||||||||||||||||    
T  13863251 aaattgagaagagagaagtgttgattatttttaaaagtacaaaaata 13863297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 11738664 - 11738704
Alignment:
Q  9 gaaatagagaagagagaagtgttgattatatctaaaagtac 49  Q
    |||||||||||||||||||||||| |||||| |||||||||    
T  11738664 gaaatagagaagagagaagtgttgtttatatttaaaagtac 11738704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 28634546 - 28634586
Alignment:
Q  9 gaaatagagaagagagaagtgttgattatatctaaaagtac 49  Q
    ||||||||  |||||||||||||||||||||||||||||||    
T  28634546 gaaatagaagagagagaagtgttgattatatctaaaagtac 28634586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 6364663 - 6364608
Alignment:
Q  9 gaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttgaa 64  Q
    |||||| |||||||||||||||||||||| | | ||||||||| ||| ||||||||    
T  6364663 gaaataaagaagagagaagtgttgattattttttaaagtacaagaatgtccttgaa 6364608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 3462719 - 3462773
Alignment:
Q  9 gaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttga 63  Q
    |||||| |||||||||||||||||||| |   |||||||||||||||| ||||||    
T  3462719 gaaataaagaagagagaagtgttgattgttaataaaagtacaaaaataaccttga 3462773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 725094 - 725038
Alignment:
Q  9 gaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttgaat 65  Q
    |||||| | ||||||||| |||| |||||||  ||||||||||||||| ||||||||    
T  725094 gaaataaataagagagaaatgtttattatattgaaaagtacaaaaatacccttgaat 725038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 4916916 - 4916971
Alignment:
Q  1 agagagatgaaatagagaagagagaagtgttgattatatctaaaagtacaaaaata 56  Q
    ||||||| ||||||||  ||||||||||||||||||| | ||||| ||| ||||||    
T  4916916 agagagaagaaatagaatagagagaagtgttgattatgtttaaaaatactaaaata 4916971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 8e-19; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 38783669 - 38783622
Alignment:
Q  9 gaaatagagaagagagaagtgttgattatatctaaaagtacaaaaata 56  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38783669 gaaatagagaagagagaagtgttgattatatctaaaagtacaaaaata 38783622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 37513289 - 37513235
Alignment:
Q  9 gaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttga 63  Q
    ||||||||||||||||||||||||||||| | | ||||||||||||| |||||||    
T  37513289 gaaatagagaagagagaagtgttgattatttttgaaagtacaaaaatgtccttga 37513235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 56
Target Start/End: Original strand, 6295422 - 6295469
Alignment:
Q  9 gaaatagagaagagagaagtgttgattatatctaaaagtacaaaaata 56  Q
    ||||| ||||||||||||||||||||||| | ||||||||||||||||    
T  6295422 gaaattgagaagagagaagtgttgattatttttaaaagtacaaaaata 6295469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 9579321 - 9579281
Alignment:
Q  9 gaaatagagaagagagaagtgttgattatatctaaaagtac 49  Q
    |||||||||||||||||||||||| |||||| |||||||||    
T  9579321 gaaatagagaagagagaagtgttgtttatatttaaaagtac 9579281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 43325567 - 43325607
Alignment:
Q  9 gaaatagagaagagagaagtgttgattatatctaaaagtac 49  Q
    |||||||||||||||||||||||| |||||| |||||||||    
T  43325567 gaaatagagaagagagaagtgttgtttatatttaaaagtac 43325607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 10405775 - 10405821
Alignment:
Q  9 gaaatagagaagagagaagtgttgattatatctaaaagtacaaaaat 55  Q
    ||||||||||||||||||||||||||||| | || |||||| |||||    
T  10405775 gaaatagagaagagagaagtgttgattatttttagaagtaccaaaat 10405821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 49
Target Start/End: Complemental strand, 31289193 - 31289160
Alignment:
Q  16 agaagagagaagtgttgattatatctaaaagtac 49  Q
    |||| |||||||||||||||||||||||||||||    
T  31289193 agaaaagagaagtgttgattatatctaaaagtac 31289160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 9636221 - 9636181
Alignment:
Q  9 gaaatagagaagagagaagtgttgattatatctaaaagtac 49  Q
    |||||||||||||||||||||||| |||| | |||||||||    
T  9636221 gaaatagagaagagagaagtgttgtttatttttaaaagtac 9636181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 8e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 10365065 - 10365127
Alignment:
Q  9 gaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttgaatacaaaa 71  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||| ||||| ||| ||||    
T  10365065 gaaatagagaagagagaagtgttgattatacataaaagtacaaaaatacccttggataaaaaa 10365127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 56
Target Start/End: Original strand, 32818848 - 32818895
Alignment:
Q  9 gaaatagagaagagagaagtgttgattatatctaaaagtacaaaaata 56  Q
    ||||| |||||||||||||||||||| || || |||||||||||||||    
T  32818848 gaaattgagaagagagaagtgttgatgatgtcaaaaagtacaaaaata 32818895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000005; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 9 - 56
Target Start/End: Original strand, 233543 - 233590
Alignment:
Q  9 gaaatagagaagagagaagtgttgattatatctaaaagtacaaaaata 56  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||    
T  233543 gaaatagagaagagagaaattttgattatatctaaaagtacaaaaata 233590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 7441003 - 7440948
Alignment:
Q  9 gaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttgaa 64  Q
    |||||||||||||||||| |||| ||||| | ||||||||||||||||||||||||    
T  7441003 gaaatagagaagagagaattgttaattatttttaaaagtacaaaaatatccttgaa 7440948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 9 - 56
Target Start/End: Original strand, 33656785 - 33656832
Alignment:
Q  9 gaaatagagaagagagaagtgttgattatatctaaaagtacaaaaata 56  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||    
T  33656785 gaaatagagaagagataagttttgattatatctaaaagtacaaaaata 33656832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 26078021 - 26077972
Alignment:
Q  14 agagaagagagaagtgttgattatatctaaaagtacaaaaatatccttga 63  Q
    |||||| |||||||| ||||||||||||||||||||||||||| ||||||    
T  26078021 agagaaaagagaagttttgattatatctaaaagtacaaaaatacccttga 26077972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 1157002 - 1156947
Alignment:
Q  1 agagagatgaaatagagaagagagaagtgttgattatatctaaaagtacaaaaata 56  Q
    ||||||| |||||||||||||||||||||||| |||| | ||||| ||| ||||||    
T  1157002 agagagaagaaatagagaagagagaagtgttggttatttttaaaaatactaaaata 1156947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 8223938 - 8223988
Alignment:
Q  9 gaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatcc 59  Q
    |||||||||||||||||||| ||| |||||| ||||||||| | |||||||    
T  8223938 gaaatagagaagagagaagtattgtttatatttaaaagtactataatatcc 8223988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 37
Target Start/End: Original strand, 19962599 - 19962627
Alignment:
Q  9 gaaatagagaagagagaagtgttgattat 37  Q
    |||||||||||||||||||||||||||||    
T  19962599 gaaatagagaagagagaagtgttgattat 19962627  T

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Target: chr5; HSP #8
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 12464243 - 12464196
Alignment:
Q  9 gaaatagagaagagagaagtgttgattatatctaaaagtacaaaaata 56  Q
    |||||||| |||||||||||||||||||| | ||||| ||| ||||||    
T  12464243 gaaatagaaaagagagaagtgttgattatgtttaaaaatactaaaata 12464196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 49
Target Start/End: Complemental strand, 24905413 - 24905382
Alignment:
Q  18 aagagagaagtgttgattatatctaaaagtac 49  Q
    |||||||||||||||||||||| |||||||||    
T  24905413 aagagagaagtgttgattatatataaaagtac 24905382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 39692564 - 39692510
Alignment:
Q  9 gaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttga 63  Q
    ||||||||||||||||||||||||||||| | | ||||||||||||| |||||||    
T  39692564 gaaatagagaagagagaagtgttgattatttttgaaagtacaaaaatgtccttga 39692510  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 20497347 - 20497295
Alignment:
Q  9 gaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatcctt 61  Q
    ||||||||||||||||||| |||||||||||  ||||||||||||||| ||||    
T  20497347 gaaatagagaagagagaagagttgattatattgaaaagtacaaaaataccctt 20497295  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 31880798 - 31880852
Alignment:
Q  9 gaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttga 63  Q
    |||||||||||||||||||||||||| ||||| | |||||| |||||| ||||||    
T  31880798 gaaatagagaagagagaagtgttgataatatcaagaagtacgaaaatacccttga 31880852  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 44247643 - 44247589
Alignment:
Q  9 gaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttga 63  Q
    |||||||||||||||||||| ||||||  ||| ||||||||||||||| ||||||    
T  44247643 gaaatagagaagagagaagttttgattgaatcaaaaagtacaaaaatacccttga 44247589  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 45059281 - 45059234
Alignment:
Q  9 gaaatagagaagagagaagtgttgattatatctaaaagtacaaaaata 56  Q
    ||||||| ||||||||||||||||||||| |||| |||||| ||||||    
T  45059281 gaaatagggaagagagaagtgttgattatttctagaagtaccaaaata 45059234  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 37324905 - 37324950
Alignment:
Q  10 aaatagagaagagagaagtgttgattatatctaaaagtacaaaaat 55  Q
    |||||||  ||||||||||||||||||| | |||||||||||||||    
T  37324905 aaatagaagagagagaagtgttgattatttttaaaagtacaaaaat 37324950  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 18371011 - 18370971
Alignment:
Q  9 gaaatagagaagagagaagtgttgattatatctaaaagtac 49  Q
    |||||||||||||||||||||||| |||| | |||||||||    
T  18371011 gaaatagagaagagagaagtgttgtttatttttaaaagtac 18370971  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000003; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 11202483 - 11202539
Alignment:
Q  9 gaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttgaat 65  Q
    |||||||||||||||||| |||| |||||||  ||||||||||||||| ||||||||    
T  11202483 gaaatagagaagagagaaatgttaattatattgaaaagtacaaaaatacccttgaat 11202539  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 37545515 - 37545570
Alignment:
Q  9 gaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttgaat 65  Q
    |||| |||||||||||||||||||||| | | |||||||||||||||||||||||||    
T  37545515 gaaacagagaagagagaagtgttgattgttt-taaaagtacaaaaatatccttgaat 37545570  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 40091131 - 40091179
Alignment:
Q  9 gaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatat 57  Q
    ||||||| |||||||||||| ||||||||||| ||||||||||||||||    
T  40091131 gaaatagtgaagagagaagttttgattatatcaaaaagtacaaaaatat 40091179  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 11749267 - 11749320
Alignment:
Q  9 gaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttg 62  Q
    |||||||||||||||||| ||||||||||||  ||||||| ||||||| |||||    
T  11749267 gaaatagagaagagagaaatgttgattatattgaaaagtataaaaatacccttg 11749320  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 33989730 - 33989674
Alignment:
Q  9 gaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttgaat 65  Q
    |||| ||| ||||||||| ||||||||||||  ||||||||||||||| ||||||||    
T  33989730 gaaagagataagagagaaatgttgattatattgaaaagtacaaaaatacccttgaat 33989674  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 20383850 - 20383798
Alignment:
Q  9 gaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatcctt 61  Q
    ||||| |||||||||||||||||||||||   |||||||||||| ||| ||||    
T  20383850 gaaattgagaagagagaagtgttgattattgttaaaagtacaaatataccctt 20383798  T

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Target: chr7; HSP #7
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 19933607 - 19933662
Alignment:
Q  1 agagagatgaaatagagaagagagaagtgttgattatatctaaaagtacaaaaata 56  Q
    ||||||| ||||||||||| |||||| |||| ||||| | ||||||||| ||||||    
T  19933607 agagagaagaaatagagaaaagagaattgtttattatttttaaaagtactaaaata 19933662  T

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Target: chr7; HSP #8
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 19964746 - 19964801
Alignment:
Q  1 agagagatgaaatagagaagagagaagtgttgattatatctaaaagtacaaaaata 56  Q
    ||||||| ||||||||||| |||||| |||| ||||| | ||||||||| ||||||    
T  19964746 agagagaagaaatagagaaaagagaattgtttattatttttaaaagtactaaaata 19964801  T

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Target: chr7; HSP #9
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 56
Target Start/End: Original strand, 22643983 - 22644030
Alignment:
Q  9 gaaatagagaagagagaagtgttgattatatctaaaagtacaaaaata 56  Q
    ||||||||||||| ||||||||||||||| | || |||||| ||||||    
T  22643983 gaaatagagaagaaagaagtgttgattatttttagaagtaccaaaata 22644030  T

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Target: scaffold0031 (Bit Score: 35; Significance: 0.00000000005; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 105638 - 105692
Alignment:
Q  9 gaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttga 63  Q
    |||||| |||||||||||||||| | ||||||||||||||||||| || ||||||    
T  105638 gaaataaagaagagagaagtgttaactatatctaaaagtacaaaactacccttga 105692  T

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Target: scaffold0031; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 1610 - 1664
Alignment:
Q  9 gaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttga 63  Q
    |||||||||||||||||||| || |||  ||| ||||||||||||||| ||||||    
T  1610 gaaatagagaagagagaagttttaattgaatcaaaaagtacaaaaatacccttga 1664  T

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Target: chr4 (Bit Score: 33; Significance: 0.0000000007; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 11671832 - 11671792
Alignment:
Q  9 gaaatagagaagagagaagtgttgattatatctaaaagtac 49  Q
    |||||||||||||||||||||||| |||||| |||||||||    
T  11671832 gaaatagagaagagagaagtgttgtttatatttaaaagtac 11671792  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 52399286 - 52399232
Alignment:
Q  9 gaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttga 63  Q
    |||||| |||||||||||||||||||| |   |||||||||||||||| ||||||    
T  52399286 gaaataaagaagagagaagtgttgattgttaataaaagtacaaaaataaccttga 52399232  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 53062195 - 53062249
Alignment:
Q  9 gaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatccttga 63  Q
    |||||||||||||||||||| || |||  ||| ||||||||||||||| ||||||    
T  53062195 gaaatagagaagagagaagttttaattgaatcaaaaagtacaaaaatacccttga 53062249  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 35106184 - 35106132
Alignment:
Q  9 gaaatagagaagagagaagtgttgattatatctaaaagtacaaaaatatcctt 61  Q
    ||||||||||| | ||||||||||||||| | ||||||||| |||||| ||||    
T  35106184 gaaatagagaaaaaagaagtgttgattatttttaaaagtaccaaaataccctt 35106132  T

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Target: chr4; HSP #5
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 56
Target Start/End: Original strand, 39121255 - 39121301
Alignment:
Q  9 gaaatagagaagagagaagtgttgattatatctaaaagtacaaaaata 56  Q
    |||||||| ||||||||||||||||||||| |  ||||||||||||||    
T  39121255 gaaatagaaaagagagaagtgttgattata-cacaaagtacaaaaata 39121301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 51075089 - 51075042
Alignment:
Q  9 gaaatagagaagagagaagtgttgattatatctaaaagtacaaaaata 56  Q
    ||||||||| ||||||||||||||||||  |  |||||||||||||||    
T  51075089 gaaatagaggagagagaagtgttgattactttcaaaagtacaaaaata 51075042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 53921152 - 53921105
Alignment:
Q  9 gaaatagagaagagagaagtgttgattatatctaaaagtacaaaaata 56  Q
    ||||||||  ||||||||||||||||||||| ||||| ||| ||||||    
T  53921152 gaaatagaagagagagaagtgttgattatatttaaaaatactaaaata 53921105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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