View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5876-23 (Length: 135)
Name: Solexa-NF5876-23
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5876-23 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 124; Significance: 3e-64; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 3e-64
Query Start/End: Original strand, 8 - 135
Target Start/End: Complemental strand, 33170273 - 33170146
Alignment:
| Q |
8 |
catcttcgttttagcatcttttgaattgaaaggagtagcaatttaagtgtatttcaaaagttatattctgaatgaagagggacataaatcatttcaattc |
107 |
Q |
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| T |
33170273 |
catcttcgttttagcatcttttgaattgaaaggagtagcaatttaagtgtatttcaaaagttatattctgaatgaagagggacataaatcatttcaattc |
33170174 |
T |
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| Q |
108 |
aaatggggcactagggcttgtagacagg |
135 |
Q |
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||||||||||||||| |||||||||||| |
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| T |
33170173 |
aaatggggcactaggacttgtagacagg |
33170146 |
T |
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