View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5876-24 (Length: 135)
Name: Solexa-NF5876-24
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5876-24 |
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| [»] scaffold0565 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: scaffold0565 (Bit Score: 127; Significance: 6e-66; HSPs: 1)
Name: scaffold0565
Description:
Target: scaffold0565; HSP #1
Raw Score: 127; E-Value: 6e-66
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 3915 - 4049
Alignment:
| Q |
1 |
cataggttgatgggctggttatgatgtcttgaaagataccatagacatttacataaatgaatcttgcatcaggaagttggttattgagttgatcaacaag |
100 |
Q |
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| T |
3915 |
cataggttgatgggctggttatgatgtcttgaaagataccataaacatttacataaatgaatcttgcatcaggaagttggttattgagttgatcaacaag |
4014 |
T |
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| Q |
101 |
agatcttaatccatcgttgaataattgatttgcag |
135 |
Q |
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| T |
4015 |
agatcttaatccattgttgaataattgatttgcag |
4049 |
T |
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Target: chr3 (Bit Score: 44; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 8 - 135
Target Start/End: Complemental strand, 7615917 - 7615790
Alignment:
| Q |
8 |
tgatgggctggttatgatgtcttgaaagataccatagacatttacataaatgaatcttgcatcaggaagttggttattgagttgatcaacaagagatctt |
107 |
Q |
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| T |
7615917 |
tgatgggttgtttatgatatcttgaaaaataccataagtatttacatagatgaatcttgcatccgtaagctcattgttgagttgattaacaagagatttc |
7615818 |
T |
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| Q |
108 |
aatccatcgttgaataattgatttgcag |
135 |
Q |
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| T |
7615817 |
aatccgttgttaaataattggtttgcag |
7615790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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