View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5876-26 (Length: 134)
Name: Solexa-NF5876-26
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5876-26 |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold1211 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 126; Significance: 2e-65; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 2e-65
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 26376931 - 26376798
Alignment:
| Q |
1 |
aagaaagtgataaatgaaatacctcccgtcttcaagaataaggcatctcctgttcaactcagatattgcgtttgcagctgcatcttttgatctgaaaata |
100 |
Q |
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| T |
26376931 |
aagaaagcgataaatgaaatacctcccgtcttcaagaataaggcatctcctgttcaactcagatattgcgtttgcacctgcatcttttgatctgaaaata |
26376832 |
T |
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| Q |
101 |
gccaatgctctacctgtaggtggatgagcaaaca |
134 |
Q |
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| T |
26376831 |
gccaatgctctacctgtaggtggatgagcaaaca |
26376798 |
T |
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Target: scaffold1211 (Bit Score: 73; Significance: 9e-34; HSPs: 1)
Name: scaffold1211
Description:
Target: scaffold1211; HSP #1
Raw Score: 73; E-Value: 9e-34
Query Start/End: Original strand, 30 - 134
Target Start/End: Complemental strand, 869 - 765
Alignment:
| Q |
30 |
cttcaagaataaggcatctcctgttcaactcagatattgcgtttgcagctgcatcttttgatctgaaaatagccaatgctctacctgtaggtggatgagc |
129 |
Q |
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| T |
869 |
cttcaagaacaaggcatctgctggtcaactcagatattgcattttcagctgcatcttttgatctgaaaataaccaatgctctacctgtcggtagatgagc |
770 |
T |
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| Q |
130 |
aaaca |
134 |
Q |
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||||| |
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| T |
769 |
aaaca |
765 |
T |
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