View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5876-27 (Length: 134)
Name: Solexa-NF5876-27
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5876-27 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 97; Significance: 4e-48; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 4e-48
Query Start/End: Original strand, 7 - 134
Target Start/End: Original strand, 3773414 - 3773548
Alignment:
| Q |
7 |
atagagaagatgaaaggttcctttttaaaaagaagagaagatgaaggtcaacaatttagagcacgtgacttttaaaatggaacttttaaatctcagcc-- |
104 |
Q |
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| T |
3773414 |
atagagaagatgaaaggttcttttttgaaaagaagagaagatgaaggtcaacaatttagagcacgtgacttttaaaatggaacttttaaatctcagccac |
3773513 |
T |
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| Q |
105 |
-----ttgatctaatggttatgtttgttcatctca |
134 |
Q |
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| T |
3773514 |
ttgttttgatctaatggttatgtttgttcctctca |
3773548 |
T |
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Target: chr2 (Bit Score: 94; Significance: 3e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 3e-46
Query Start/End: Original strand, 7 - 104
Target Start/End: Complemental strand, 44943345 - 44943248
Alignment:
| Q |
7 |
atagagaagatgaaaggttcctttttaaaaagaagagaagatgaaggtcaacaatttagagcacgtgacttttaaaatggaacttttaaatctcagcc |
104 |
Q |
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| T |
44943345 |
atagagaagatgaaaggttcttttttaaaaagaagagaagatgaaggtcaacaatttagagcacgtgacttttaaaatggaacttttaaatctcagcc |
44943248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 1e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 1e-36
Query Start/End: Original strand, 7 - 104
Target Start/End: Complemental strand, 22966456 - 22966360
Alignment:
| Q |
7 |
atagagaagatgaaaggttcctttttaaaaagaagagaagatgaaggtcaacaatttagagcacgtgacttttaaaatggaacttttaaatctcagcc |
104 |
Q |
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|||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22966456 |
atagagaagatgaaaggttc-ttttaaaatggaagagaagatgaaggtcaacaatttagagcacgtgacttttaaaatggaacttttaaatctcagcc |
22966360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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