View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5876-30 (Length: 132)
Name: Solexa-NF5876-30
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5876-30 |
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Alignment Details
Target: chr7 (Bit Score: 57; Significance: 3e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 3e-24
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 15959475 - 15959531
Alignment:
| Q |
4 |
aggagcacattctacctggtctggccacctgaactattgatttggctcaaaagttaa |
60 |
Q |
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| T |
15959475 |
aggagcacattctacctggtctggccacctgaactattgatttggctcaaaagttaa |
15959531 |
T |
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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 79 - 121
Target Start/End: Original strand, 15959583 - 15959625
Alignment:
| Q |
79 |
aaatagtattggcacgattcaaattataagtatttattgtact |
121 |
Q |
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| T |
15959583 |
aaatagcattggcaagattcaaattataagtatttattgtact |
15959625 |
T |
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