View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5876-33 (Length: 129)
Name: Solexa-NF5876-33
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5876-33 |
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Alignment Details
Target: chr5 (Bit Score: 31; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 31735355 - 31735321
Alignment:
| Q |
1 |
atgaagataaaataaggagaatatgaagggccagt |
35 |
Q |
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| T |
31735355 |
atgaagataaaataaggagaacatgaagggccagt |
31735321 |
T |
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Target: chr5; HSP #2
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 88
Target Start/End: Complemental strand, 31735060 - 31735033
Alignment:
| Q |
61 |
atcgttttcttctatggatttcaaatca |
88 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
31735060 |
atcgttttcttctatggatttcaaatca |
31735033 |
T |
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