View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5876-35 (Length: 128)
Name: Solexa-NF5876-35
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5876-35 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 84; Significance: 1e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 1e-40
Query Start/End: Original strand, 28 - 128
Target Start/End: Original strand, 7548737 - 7548842
Alignment:
| Q |
28 |
tgtatttgtatctgayaataaatcattaacgcggtgccggtggtgtctcacattca-----cattccattccaatcagatcgatgaagctgaaaccgctg |
122 |
Q |
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| T |
7548737 |
tgtatttgtatctgataataaatcattaacgcggtgccggtggtgtctcacattcacattccattccattccaatcagatcgatgaagctgaaaccgctg |
7548836 |
T |
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| Q |
123 |
catcta |
128 |
Q |
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|||||| |
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| T |
7548837 |
catcta |
7548842 |
T |
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