View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5876-38 (Length: 127)
Name: Solexa-NF5876-38
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5876-38 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 113; Significance: 1e-57; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 1e-57
Query Start/End: Original strand, 7 - 127
Target Start/End: Original strand, 31583036 - 31583156
Alignment:
| Q |
7 |
agtcaggaccataaacaaagaggtcagggtctaatgttgtgttgacaagttttgttggacatagtccttgcaaatagtcctctttggtgattctcaaagt |
106 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31583036 |
agtcaggaccataaacaaagaggtcggggtctaatgttgtgttgacaagttttgttggacatagtccttgcaaatagtcctctttggtgattctcaaagt |
31583135 |
T |
|
| Q |
107 |
atgttcatcagggttggcttc |
127 |
Q |
| |
|
|||||||||||| |||||||| |
|
|
| T |
31583136 |
atgttcatcaggtttggcttc |
31583156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 1e-57
Query Start/End: Original strand, 7 - 127
Target Start/End: Original strand, 31641642 - 31641762
Alignment:
| Q |
7 |
agtcaggaccataaacaaagaggtcagggtctaatgttgtgttgacaagttttgttggacatagtccttgcaaatagtcctctttggtgattctcaaagt |
106 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31641642 |
agtcaggaccataaacaaagaggtcggggtctaatgttgtgttgacaagttttgttggacatagtccttgcaaatagtcctctttggtgattctcaaagt |
31641741 |
T |
|
| Q |
107 |
atgttcatcagggttggcttc |
127 |
Q |
| |
|
|||||||||||| |||||||| |
|
|
| T |
31641742 |
atgttcatcaggtttggcttc |
31641762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University