View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5876-42 (Length: 123)
Name: Solexa-NF5876-42
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5876-42 |
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Alignment Details
Target: chr1 (Bit Score: 97; Significance: 4e-48; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 4e-48
Query Start/End: Original strand, 8 - 108
Target Start/End: Complemental strand, 11455292 - 11455192
Alignment:
| Q |
8 |
cctacaacttgacgaccaccagtttcattgtatctttgcatctgccttccagaacgagataccaaacaaaccatcttctctatccaaaacacttaattaa |
107 |
Q |
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| T |
11455292 |
cctacaacttgacgaccaccagtttcattgtatctttgcatctgccttccagaacgagataccaaacaaaccatcttctctatcaaaaacacttaattaa |
11455193 |
T |
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| Q |
108 |
c |
108 |
Q |
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| T |
11455192 |
c |
11455192 |
T |
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Target: chr8 (Bit Score: 28; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 81
Target Start/End: Original strand, 44342263 - 44342306
Alignment:
| Q |
38 |
tatctttgcatctgccttccagaacgagataccaaacaaaccat |
81 |
Q |
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| T |
44342263 |
tatctctgcaactcccttccagagcgagataccaaacaaaccat |
44342306 |
T |
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