View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5876-43 (Length: 123)

Name: Solexa-NF5876-43
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5876-43
Solexa-NF5876-43
[»] chr7 (2 HSPs)
chr7 (1-123)||(28879568-28879690)
chr7 (1-123)||(28884461-28884583)


Alignment Details
Target: chr7 (Bit Score: 111; Significance: 2e-56; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 2e-56
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 28879568 - 28879690
Alignment:
Q  1 agggataggatttgagactgttaaaatgttggcctcaaatggtgtcaaggtgatgctcacagctagagatgagaaaaaaggaaatgaagccattgagaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||    
T  28879568 agggataggatttgagactgttaaaatgttggcctcaaatggtgtcaaggtgatgctcacagctagagatgagaaaaaggggaatgaagccattcagaaa 28879667  T
Q  101 ttgaaacagtttggtctctctga 123  Q
    |||||||||||||||||||||||    
T  28879668 ttgaaacagtttggtctctctga 28879690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 107; E-Value: 4e-54
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 28884461 - 28884583
Alignment:
Q  1 agggataggatttgagactgttaaaatgttggcctcaaatggtgtcaaggtgatgctcacagctagagatgagaaaaaaggaaatgaagccattgagaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||| |||||    
T  28884461 agggataggatttgagactgttaaaatgttggcctcaaatggtgtcaaggtggtgcttacagctagagatgagaaaaaagggaatgaagccattcagaaa 28884560  T
Q  101 ttgaaacagtttggtctctctga 123  Q
    |||||||||||||||||||||||    
T  28884561 ttgaaacagtttggtctctctga 28884583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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