View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5876-44 (Length: 123)
Name: Solexa-NF5876-44
Description: NF5876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5876-44 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 113; Significance: 1e-57; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 1e-57
Query Start/End: Original strand, 7 - 123
Target Start/End: Original strand, 20047273 - 20047389
Alignment:
| Q |
7 |
agaaaaggggtgaagagttgaggcaacgcctcagtgctctaagaaatcaacagccaccatcttcatcttaaaaagttatcttgtttttgaattttgttca |
106 |
Q |
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| T |
20047273 |
agaaaaggggggaagagttgaggcaacgcctcagtgctctaagaaatcaacagccaccatcttcatcttaaaaagttatcttgtttttgaattttgttca |
20047372 |
T |
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| Q |
107 |
tcaaacttatgacagtg |
123 |
Q |
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| T |
20047373 |
tcaaacttatgacagtg |
20047389 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 120
Target Start/End: Complemental strand, 12494822 - 12494706
Alignment:
| Q |
7 |
agaaaaggggtgaagagttgaggcaacgcctcagtgctctaagaaatcaacagccaccatcttca---tcttaaaaagttatcttgtttttgaattttgt |
103 |
Q |
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|||| |||| ||| ||||| |||| |||||||| || || ||| |||||||| | |||||||||| |||||| || | |||||||||||||||| | | |
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| T |
12494822 |
agaagagggatgacgagtttaggctacgcctcattgttcaaaggaatcaacaacgaccatcttcatcttcttaataaatgatcttgtttttgaattctct |
12494723 |
T |
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| Q |
104 |
tcatcaaacttatgaca |
120 |
Q |
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| T |
12494722 |
tcatcctacttatgaca |
12494706 |
T |
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